Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
PSME_51174.g
Position
jcf7190000047756:207295-255754 (+)
48459bp
Gene Type
gene
Gene Description (Protein Product)
Elongator complex protein
Organism
Pseudotsuga menziesii
Also AS AT3G11220

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
PSME_51261.g Belongs to the short-chain dehydrogenases reductases (SDR) family
Regulatory gene
PSME_00767.g transcription factor
PSME_01516.g transcription factor
PSME_03590.g Myb-like DNA-binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000123 histone acetyltransferase complex CC
GO:0000993 RNA polymerase II complex binding MF
GO:0001098 basal transcription machinery binding MF
GO:0001099 basal RNA polymerase II transcription machinery binding MF
GO:0001101 response to acid chemical BP
GO:0001932 regulation of protein phosphorylation BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006325 chromatin organization BP
GO:0006351 DNA-templated transcription BP
GO:0006354 DNA-templated transcription elongation BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006366 transcription by RNA polymerase II BP
GO:0006368 transcription elongation by RNA polymerase II BP
GO:0006464 protein modification process BP
GO:0006473 protein acetylation BP
GO:0006475 internal protein amino acid acetylation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006979 response to oxidative stress BP
GO:0006996 organelle organization BP
GO:0008023 transcription elongation factor complex CC
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008284 positive regulation of cell population proliferation BP
GO:0008607 phosphorylase kinase regulator activity MF
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009737 response to abscisic acid BP
GO:0009743 response to carbohydrate BP
GO:0009744 response to sucrose BP
GO:0009889 regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009966 regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010646 regulation of cell communication BP
GO:0010928 regulation of auxin mediated signaling pathway BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016573 histone acetylation BP
GO:0018130 heterocycle biosynthetic process BP
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0018393 internal peptidyl-lysine acetylation BP
GO:0018394 peptidyl-lysine acetylation BP
GO:0019207 kinase regulator activity MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019538 protein metabolic process BP
GO:0019887 protein kinase regulator activity MF
GO:0019899 enzyme binding MF
GO:0023051 regulation of signaling BP
GO:0030234 enzyme regulator activity MF
GO:0031248 protein acetyltransferase complex CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031399 regulation of protein modification process BP
GO:0031537 regulation of anthocyanin metabolic process BP
GO:0031538 negative regulation of anthocyanin metabolic process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032268 regulation of protein metabolic process BP
GO:0032774 RNA biosynthetic process BP
GO:0032991 protein-containing complex CC
GO:0033588 elongator holoenzyme complex CC
GO:0033993 response to lipid BP
GO:0034285 response to disaccharide BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0036211 protein modification process BP
GO:0042127 regulation of cell population proliferation BP
GO:0042221 response to chemical BP
GO:0042325 regulation of phosphorylation BP
GO:0043170 macromolecule metabolic process BP
GO:0043175 RNA polymerase core enzyme binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0043543 protein acylation BP
GO:0043549 regulation of kinase activity BP
GO:0043609 regulation of carbon utilization BP
GO:0043966 histone H3 acetylation BP
GO:0043967 histone H4 acetylation BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0044877 protein-containing complex binding MF
GO:0045859 regulation of protein kinase activity BP
GO:0046483 heterocycle metabolic process BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048831 regulation of shoot system development BP
GO:0050789 regulation of biological process BP
GO:0050790 regulation of catalytic activity BP
GO:0050793 regulation of developmental process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0051338 regulation of transferase activity BP
GO:0051716 cellular response to stimulus BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0070063 RNA polymerase binding MF
GO:0070887 cellular response to chemical stimulus BP
GO:0071310 cellular response to organic substance BP
GO:0071322 cellular response to carbohydrate stimulus BP
GO:0071324 cellular response to disaccharide stimulus BP
GO:0071329 cellular response to sucrose stimulus BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0097305 response to alcohol BP
GO:0097659 nucleic acid-templated transcription BP
GO:0098772 molecular function regulator activity MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901700 response to oxygen-containing compound BP
GO:1901701 cellular response to oxygen-containing compound BP
GO:1902493 acetyltransferase complex CC
GO:1902494 catalytic complex CC
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1990234 transferase complex CC
GO:2000024 regulation of leaf development BP
GO:2000026 regulation of multicellular organismal development BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP