Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC103935322
View in Genome Browser
Position
NW_025999574.1:34078-53819 (+)
19741bp
Gene Type
gene
Gene Description (Protein Product)
Component of the NOP7 complex; which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome
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Organism
Pyrus x bretschneideri
Also AS MD17G1274500AT5G14520

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC103948640 Surfeit locus protein 6
gene-LOC103938367 DEAD-box ATP-dependent RNA helicase
gene-LOC125469046 ATP-dependent RNA helicase
Regulatory gene
gene-LOC103926530 NAC transcription factor
gene-LOC103926659 Transcription factor
gene-LOC103927195 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000460 maturation of 5.8S rRNA BP
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) BP
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) BP
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) BP
GO:0000470 maturation of LSU-rRNA BP
GO:0000793 condensed chromosome CC
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003729 mRNA binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005694 chromosome CC
GO:0005730 nucleolus CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006260 DNA replication BP
GO:0006261 DNA-templated DNA replication BP
GO:0006364 rRNA processing BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0006996 organelle organization BP
GO:0006997 nucleus organization BP
GO:0007000 nucleolus organization BP
GO:0007049 cell cycle BP
GO:0007154 cell communication BP
GO:0007275 multicellular organism development BP
GO:0007399 nervous system development BP
GO:0007417 central nervous system development BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008283 cell population proliferation BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009267 cellular response to starvation BP
GO:0009405 obsolete pathogenesis BP
GO:0009605 response to external stimulus BP
GO:0009987 cellular process BP
GO:0009991 response to extracellular stimulus BP
GO:0010001 glial cell differentiation BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010570 regulation of filamentous growth BP
GO:0010876 lipid localization BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016072 rRNA metabolic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019915 lipid storage BP
GO:0022008 neurogenesis BP
GO:0022402 cell cycle process BP
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0030154 cell differentiation BP
GO:0030447 filamentous growth BP
GO:0030490 maturation of SSU-rRNA BP
GO:0030684 preribosome CC
GO:0030686 90S preribosome CC
GO:0030687 preribosome, large subunit precursor CC
GO:0031016 pancreas development BP
GO:0031017 exocrine pancreas development BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031667 response to nutrient levels BP
GO:0031668 cellular response to extracellular stimulus BP
GO:0031669 cellular response to nutrient levels BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032101 regulation of response to external stimulus BP
GO:0032102 negative regulation of response to external stimulus BP
GO:0032104 regulation of response to extracellular stimulus BP
GO:0032105 negative regulation of response to extracellular stimulus BP
GO:0032107 regulation of response to nutrient levels BP
GO:0032108 negative regulation of response to nutrient levels BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0033365 protein localization to organelle BP
GO:0033554 cellular response to stress BP
GO:0034470 ncRNA processing BP
GO:0034613 protein localization BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034660 ncRNA metabolic process BP
GO:0035272 exocrine system development BP
GO:0035690 cellular response to xenobiotic stimulus BP
GO:0036170 filamentous growth of a population of unicellular organisms in response to starvation BP
GO:0040007 growth BP
GO:0040008 regulation of growth BP
GO:0042063 gliogenesis BP
GO:0042221 response to chemical BP
GO:0042254 ribosome biogenesis BP
GO:0042273 ribosomal large subunit biogenesis BP
GO:0042274 ribosomal small subunit biogenesis BP
GO:0042493 response to xenobiotic stimulus BP
GO:0042594 response to starvation BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0044085 cellular component biogenesis BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044182 filamentous growth of a population of unicellular organisms BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044419 biological process involved in interspecies interaction between organisms BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044452 obsolete nucleolar part CC
GO:0044464 obsolete cell part CC
GO:0044786 cell cycle DNA replication BP
GO:0045926 negative regulation of growth BP
GO:0046483 heterocycle metabolic process BP
GO:0048513 animal organ development BP
GO:0048519 negative regulation of biological process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0048709 oligodendrocyte differentiation BP
GO:0048731 system development BP
GO:0048732 gland development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051179 localization BP
GO:0051235 maintenance of location BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051641 cellular localization BP
GO:0051704 obsolete multi-organism process BP
GO:0051716 cellular response to stimulus BP
GO:0051726 regulation of cell cycle BP
GO:0055123 digestive system development BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060258 negative regulation of filamentous growth BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070013 intracellular organelle lumen CC
GO:0070545 PeBoW complex CC
GO:0070727 cellular macromolecule localization BP
GO:0070887 cellular response to chemical stimulus BP
GO:0071496 cellular response to external stimulus BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0090069 regulation of ribosome biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:1900428 regulation of filamentous growth of a population of unicellular organisms BP
GO:1900429 negative regulation of filamentous growth of a population of unicellular organisms BP
GO:1900434 regulation of filamentous growth of a population of unicellular organisms in response to starvation BP
GO:1900435 obsolete negative regulation of filamentous growth of a population of unicellular organisms in response to starvation BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901576 organic substance biosynthetic process BP
GO:1990904 ribonucleoprotein complex CC
GO:2000232 regulation of rRNA processing BP
KEGG Term Name Description
map04130 SNARE interactions in vesicular transport -