Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC103939234
View in Genome Browser
Position
NW_025999612.1:12690864-12694848 (+)
3984bp
Gene Type
gene
Gene Description (Protein Product)
geranylgeranyl transferase type-2 subunit
Organism
Pyrus x bretschneideri
Also AS MD06G1221400AT5G12210

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC103964930 Protein prenyltransferase alpha subunit repeat
gene-LOC125476728 Protein prenyltransferase alpha subunit repeat
gene-LOC103963949 Protein farnesyltransferase subunit
Regulatory gene
gene-LOC103926616 ethylene-responsive transcription factor
gene-LOC103926617 ethylene-responsive transcription factor
gene-LOC103926677 ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003008 system process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004659 prenyltransferase activity MF
GO:0004661 protein geranylgeranyltransferase activity MF
GO:0004663 Rab geranylgeranyltransferase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0005968 Rab-protein geranylgeranyltransferase complex CC
GO:0006464 protein modification process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007275 multicellular organism development BP
GO:0007600 sensory perception BP
GO:0007601 visual perception BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008270 zinc ion binding MF
GO:0008318 protein prenyltransferase activity MF
GO:0009555 pollen development BP
GO:0009987 cellular process BP
GO:0010941 regulation of cell death BP
GO:0016020 membrane CC
GO:0016740 transferase activity MF
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups MF
GO:0017016 small GTPase binding MF
GO:0017137 small GTPase binding MF
GO:0018342 protein prenylation BP
GO:0018344 protein geranylgeranylation BP
GO:0019538 protein metabolic process BP
GO:0019899 enzyme binding MF
GO:0022622 root system development BP
GO:0031267 small GTPase binding MF
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032991 protein-containing complex CC
GO:0036211 protein modification process BP
GO:0042981 regulation of apoptotic process BP
GO:0043067 regulation of programmed cell death BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0043687 post-translational protein modification BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0048229 gametophyte development BP
GO:0048364 root development BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050877 nervous system process BP
GO:0050953 sensory perception of light stimulus BP
GO:0051020 GTPase binding MF
GO:0065007 biological regulation BP
GO:0071704 organic substance metabolic process BP
GO:0071944 cell periphery CC
GO:0097354 prenylation BP
GO:0099402 plant organ development BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1902494 catalytic complex CC
GO:1990234 transferase complex CC