PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-LOC103964605 View in Genome Browser
Position	NW_025999457.1:7814684-7829806 (+) 15122bp
Gene Type	gene
Gene Description (Protein Product)	Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity Dehydrodolichyl diphosphate syntase complex subunit
Organism	Pyrus x bretschneideri
Also AS	MD10G1078500MD10G1078800AT5G60340AT1G11755

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-LOC125479636 RNA-binding protein NOB1 gene-LOC125479938 RNA-binding protein NOB1 gene-LOC103965679 Phytoene synthase
Regulatory gene	gene-LOC103926579 transcription factor gene-LOC103926580 Developmental protein SEPALLATA gene-LOC103926659 Transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000166	nucleotide binding	MF
GO:0000902	cell morphogenesis	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004017	adenylate kinase activity	MF
GO:0005488	binding	MF
GO:0005524	ATP binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006753	nucleoside phosphate metabolic process	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008144	obsolete drug binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009117	nucleotide metabolic process	BP
GO:0009123	nucleoside monophosphate metabolic process	BP
GO:0009165	nucleotide biosynthetic process	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009826	unidimensional cell growth	BP
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0016049	cell growth	BP
GO:0016301	kinase activity	MF
GO:0016310	phosphorylation	BP
GO:0016740	transferase activity	MF
GO:0016772	transferase activity, transferring phosphorus-containing groups	MF
GO:0016776	phosphotransferase activity, phosphate group as acceptor	MF
GO:0017076	purine nucleotide binding	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019205	nucleobase-containing compound kinase activity	MF
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019637	organophosphate metabolic process	BP
GO:0030554	adenyl nucleotide binding	MF
GO:0032502	developmental process	BP
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032559	adenyl ribonucleotide binding	MF
GO:0032989	cellular component morphogenesis	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0036094	small molecule binding	MF
GO:0040007	growth	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044281	small molecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0046939	nucleotide phosphorylation	BP
GO:0046940	nucleoside monophosphate phosphorylation	BP
GO:0048589	developmental growth	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0050145	nucleoside monophosphate kinase activity	MF
GO:0055086	nucleobase-containing small molecule metabolic process	BP
GO:0060560	developmental growth involved in morphogenesis	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080186	developmental vegetative growth	BP
GO:0090407	organophosphate biosynthetic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:1901265	nucleoside phosphate binding	MF
GO:1901293	nucleoside phosphate biosynthetic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901576	organic substance biosynthetic process	BP

KEGG Term	Name	Description
map03008	Ribosome biogenesis in eukaryotes	Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
map01110	Biosynthesis of secondary metabolites	-
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00900	Terpenoid backbone biosynthesis	Terpenoids, also known as isoprenoids, are a large class of natural products consisting of isoprene (C5) units. There are two biosynthetic pathways, the mevalonate pathway [MD:M00095] and the non-mevalonate pathway or the MEP/DOXP pathway [MD:M00096], for the terpenoid building blocks: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). The action of prenyltransferases then generates higher-order building blocks: geranyl diphosphate (GPP), farsenyl diphosphate (FPP), and geranylgeranyl diphosphate (GGPP), which are the precursors of monoterpenoids (C10), sesquiterpenoids (C15), and diterpenoids (C20), respectively. Condensation of these building blocks gives rise to the precursors of sterols (C30) and carotenoids (C40). The MEP/DOXP pathway is absent in higher animals and fungi, but in green plants the MEP/DOXP and mevalonate pathways co-exist in separate cellular compartments. The MEP/DOXP pathway, operating in the plastids, is responsible for the formation of essential oil monoterpenes and linalyl acetate, some sesquiterpenes, diterpenes, and carotenoids and phytol. The mevalonate pathway, operating in the cytosol, gives rise to triterpenes, sterols, and most sesquiterpenes.
map00230	Purine metabolism	-