PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC125469579 View in Genome Browser
Position	NW_025999768.1:656673-659471 (+) 2798bp
Gene Type	gene
Gene Description (Protein Product)	Binds to actin and affects the structure of the cytoskeleton. At high concentrations; profilin prevents the polymerization of actin; whereas it enhances it at low concentrations
Organism	Pyrus x bretschneideri
Also AS	MD02G1068000AT2G19770

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC125472657 Belongs to the CAP family

gene-LOC125473734 Ubiquitin exists either covalently attached to another protein; or free (unanchored). When covalently bound; it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin); a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains; when attached to a target protein; have different functions depending on the Lys residue of the ubiquitin that is linked

gene-LOC125475888 F-actin-capping protein subunit

Regulatory gene

gene-LOC103926530 NAC transcription factor

gene-LOC103926593 Myb-related protein

gene-LOC103926634 SANT SWI3; ADA2; N-CoR and TFIIIB'' DNA-binding domains

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003779	actin binding	MF
GO:0003785	actin monomer binding	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005856	cytoskeleton	CC
GO:0005938	cell cortex	CC
GO:0008064	regulation of actin polymerization or depolymerization	BP
GO:0008092	cytoskeletal protein binding	MF
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0009987	cellular process	BP
GO:0010639	negative regulation of organelle organization	BP
GO:0015629	actin cytoskeleton	CC
GO:0016043	cellular component organization	BP
GO:0030832	regulation of actin filament length	BP
GO:0030833	regulation of actin filament polymerization	BP
GO:0030837	negative regulation of actin filament polymerization	BP
GO:0031333	negative regulation of protein-containing complex assembly	BP
GO:0032271	regulation of protein polymerization	BP
GO:0032272	negative regulation of protein polymerization	BP
GO:0032507	maintenance of protein location in cell	BP
GO:0032535	regulation of cellular component size	BP
GO:0032956	regulation of actin cytoskeleton organization	BP
GO:0032970	regulation of actin filament-based process	BP
GO:0033036	macromolecule localization	BP
GO:0033043	regulation of organelle organization	BP
GO:0034613	protein localization	BP
GO:0042989	sequestering of actin monomers	BP
GO:0043226	organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043254	regulation of protein-containing complex assembly	BP
GO:0044087	regulation of cellular component biogenesis	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0045185	maintenance of protein location	BP
GO:0048519	negative regulation of biological process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051129	negative regulation of cellular component organization	BP
GO:0051179	localization	BP
GO:0051235	maintenance of location	BP
GO:0051493	regulation of cytoskeleton organization	BP
GO:0051494	negative regulation of cytoskeleton organization	BP
GO:0051641	cellular localization	BP
GO:0051651	maintenance of location in cell	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070727	cellular macromolecule localization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0090066	regulation of anatomical structure size	BP
GO:0099568	cytoplasmic region	CC
GO:0110053	regulation of actin filament organization	BP
GO:1902903	regulation of supramolecular fiber organization	BP
GO:1902904	negative regulation of supramolecular fiber organization	BP