Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC125475495
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Position
NW_025999446.1:1217573-1220844 (+)
3271bp
Gene Type
gene
Gene Description (Protein Product)
Protein ROOT INITIATION DEFECTIVE 3
-
Organism
Pyrus x bretschneideri
Also AS MD15G1081000AT3G49180

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC125479505 ribosome biogenesis protein
gene-LOC125476010 Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0; it binds pre-60S subunits at an early stage of assembly in the nucleolus; and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes
gene-LOC125476773 Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0; it binds pre-60S subunits at an early stage of assembly in the nucleolus; and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes
Regulatory gene
gene-LOC103926579 transcription factor
gene-LOC103926580 Developmental protein SEPALLATA
gene-LOC103926731 B3 DNA binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000151 ubiquitin ligase complex CC
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0008150 biological_process BP
GO:0031461 cullin-RING ubiquitin ligase complex CC
GO:0032991 protein-containing complex CC
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0048509 regulation of meristem development BP
GO:0048519 negative regulation of biological process BP
GO:0050789 regulation of biological process BP
GO:0050793 regulation of developmental process BP
GO:0051093 negative regulation of developmental process BP
GO:0065007 biological regulation BP
GO:0080008 Cul4-RING E3 ubiquitin ligase complex CC
GO:1902183 regulation of shoot apical meristem development BP
GO:1902184 negative regulation of shoot apical meristem development BP
GO:1902494 catalytic complex CC
GO:1990234 transferase complex CC