Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC125476739
View in Genome Browser
Position
NW_025999501.1:6316770-6319630 (-)
2860bp
Gene Type
gene
Gene Description (Protein Product)
Involved in the synthesis of glucuronoxylan hemicellulose in secondary cell walls
Organism
Pyrus x bretschneideri
Also AS MD15G1393400AT1G27600

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC125477688 Beta-1;3-galactosyltransferase
gene-LOC125477913 Polysaccharide biosynthesis
gene-LOC125480519 ESKIMO 1-like
Regulatory gene
gene-LOC103926579 transcription factor
gene-LOC103926580 Developmental protein SEPALLATA
gene-LOC103926731 B3 DNA binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000139 Golgi membrane CC
GO:0000271 polysaccharide biosynthetic process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005794 Golgi apparatus CC
GO:0005975 carbohydrate metabolic process BP
GO:0005976 polysaccharide metabolic process BP
GO:0007275 multicellular organism development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009555 pollen development BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009832 plant-type cell wall biogenesis BP
GO:0009834 plant-type secondary cell wall biogenesis BP
GO:0009987 cellular process BP
GO:0010208 pollen wall assembly BP
GO:0010383 cell wall polysaccharide metabolic process BP
GO:0010410 hemicellulose metabolic process BP
GO:0010413 glucuronoxylan metabolic process BP
GO:0010417 glucuronoxylan biosynthetic process BP
GO:0010584 pollen exine formation BP
GO:0010927 cellular component assembly involved in morphogenesis BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016051 carbohydrate biosynthetic process BP
GO:0016740 transferase activity MF
GO:0016757 glycosyltransferase activity MF
GO:0016763 pentosyltransferase activity MF
GO:0022607 cellular component assembly BP
GO:0030198 extracellular matrix organization BP
GO:0031090 organelle membrane CC
GO:0031984 organelle subcompartment CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032989 cellular component morphogenesis BP
GO:0033692 cellular polysaccharide biosynthetic process BP
GO:0034637 cellular carbohydrate biosynthetic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0042285 xylosyltransferase activity MF
GO:0042546 cell wall biogenesis BP
GO:0043062 extracellular structure organization BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044036 cell wall macromolecule metabolic process BP
GO:0044038 cell wall macromolecule biosynthetic process BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044262 cellular carbohydrate metabolic process BP
GO:0044264 cellular polysaccharide metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045229 external encapsulating structure organization BP
GO:0045491 xylan metabolic process BP
GO:0045492 xylan biosynthetic process BP
GO:0048229 gametophyte development BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0070589 cellular component macromolecule biosynthetic process BP
GO:0070592 cell wall polysaccharide biosynthetic process BP
GO:0071554 cell wall organization or biogenesis BP
GO:0071669 plant-type cell wall organization or biogenesis BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0085029 extracellular matrix assembly BP
GO:0098588 bounding membrane of organelle CC
GO:0098791 Golgi apparatus subcompartment CC
GO:1901576 organic substance biosynthetic process BP