Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
gene-LOC125476924
View in Genome Browser
Position
NW_025999501.1:13550886-13553850 (+)
2964bp
Gene Type
gene
Gene Description (Protein Product)
Lignin degradation and detoxification of lignin-derived products
Organism
Pyrus x bretschneideri
Also AS MD12G1144600AT5G60020

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC125479350 Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I
gene-LOC125476987 Shikimate O-hydroxycinnamoyltransferase-like
gene-LOC125477496 Cinnamoyl-CoA reductase
Regulatory gene
gene-LOC103926579 transcription factor
gene-LOC103926580 Developmental protein SEPALLATA
gene-LOC103926731 B3 DNA binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0006725 cellular aromatic compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009698 phenylpropanoid metabolic process BP
GO:0009699 phenylpropanoid biosynthetic process BP
GO:0009808 lignin metabolic process BP
GO:0009809 lignin biosynthetic process BP
GO:0009987 cellular process BP
GO:0016491 oxidoreductase activity MF
GO:0016722 oxidoreductase activity, acting on metal ions MF
GO:0019438 aromatic compound biosynthetic process BP
GO:0019748 secondary metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044550 secondary metabolite biosynthetic process BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0071704 organic substance metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP