Basic Information
Gene ID
gene-LOC125477479
Position
NW_025999513.1:5726720-5728984 (+)
2264bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the glycosyl hydrolase 28 family
Organism
Also AS MD16G1163200AT1G02790

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-LOC125479945 Alpha-L-arabinofuranosidase
gene-PG1 Polygalacturonase-like
gene-LOC125477516 Polygalacturonase
Regulatory gene
gene-LOC103926731 B3 DNA binding domain
gene-LOC103927195 Dof zinc finger protein
gene-LOC103927830 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
GO Term Description GO Category
GO:0000272 polysaccharide catabolic process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds MF
GO:0005488 binding MF
GO:0005975 carbohydrate metabolic process BP
GO:0005976 polysaccharide metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009987 cellular process BP
GO:0010393 galacturonan metabolic process BP
GO:0016052 carbohydrate catabolic process BP
GO:0016787 hydrolase activity MF
GO:0016798 hydrolase activity, acting on glycosyl bonds MF
GO:0017144 xenobiotic metabolic process BP
GO:0019863 IgE binding MF
GO:0019865 immunoglobulin binding MF
GO:0042737 xenobiotic catabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044877 protein-containing complex binding MF
GO:0045488 pectin metabolic process BP
GO:0045490 pectin catabolic process BP
GO:0047911 galacturan 1,4-alpha-galacturonidase activity MF
GO:0071704 organic substance metabolic process BP
GO:1901575 organic substance catabolic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00040 Pentose and glucuronate interconversions -