PPGR - Gene Detail

Basic Information

Gene ID	gene-LOC125478710 View in Genome Browser
Position	NW_025999568.1:893268-899944 (-) 6676bp
Gene Type	gene
Gene Description (Protein Product)	Hydrolyzes glycerol-phospholipids at the terminal phosphodiesteric bond
Organism	Pyrus x bretschneideri
Also AS	MD00G1090900AT3G15730

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-LOC125480614 Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). Plays a central role in phospholipid metabolism and in the interorganelle trafficking of phosphatidylserine

gene-LOC125479537 Catalyzes the second two steps of the methylation pathway of phosphatidylcholine biosynthesis; the SAM-dependent methylation of phosphatidylmonomethylethanolamine (PMME) to phosphatidyldimethylethanolamine (PDME) and of PDME to phosphatidylcholine (PC)

gene-LOC125479985 Belongs to the MIP aquaporin (TC 1.A.8) family

Regulatory gene

gene-LOC103926579 transcription factor

gene-LOC103926580 Developmental protein SEPALLATA

gene-LOC103927195 Dof zinc finger protein

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005886	plasma membrane	CC
GO:0009536	plastid	CC
GO:0012505	endomembrane system	CC
GO:0016020	membrane	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0071944	cell periphery	CC

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00565	Ether lipid metabolism	-
map00564	Glycerophospholipid metabolism	-