PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	gene-LOC125479221 View in Genome Browser
Position	NW_025999590.1:5062533-5064932 (-) 2399bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the small GTPase superfamily. Rho family
Organism	Pyrus x bretschneideri
Also AS	MD08G1010300AT1G75840

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-LOC125480109 Geranylgeranyl transferase type-1 subunit gene-LOC125479878 two-component response regulator gene-LOC125479773 DA1-related 1-like
Regulatory gene	gene-LOC103927195 Dof zinc finger protein gene-LOC103927830 Dof zinc finger protein gene-LOC103930288 Dof zinc finger protein

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000166	nucleotide binding	MF
GO:0000226	microtubule cytoskeleton organization	BP
GO:0000902	cell morphogenesis	BP
GO:0000904	cell morphogenesis involved in differentiation	BP
GO:0001101	response to acid chemical	BP
GO:0001882	nucleoside binding	MF
GO:0001883	purine nucleoside binding	MF
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0003924	GTPase activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005525	GTP binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005730	nucleolus	CC
GO:0005737	cytoplasm	CC
GO:0005819	spindle	CC
GO:0005856	cytoskeleton	CC
GO:0005886	plasma membrane	CC
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007017	microtubule-based process	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0008064	regulation of actin polymerization or depolymerization	BP
GO:0008150	biological_process	BP
GO:0009314	response to radiation	BP
GO:0009416	response to light stimulus	BP
GO:0009524	phragmoplast	CC
GO:0009628	response to abiotic stimulus	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009733	response to auxin	BP
GO:0009734	auxin-activated signaling pathway	BP
GO:0009737	response to abscisic acid	BP
GO:0009738	abscisic acid-activated signaling pathway	BP
GO:0009755	hormone-mediated signaling pathway	BP
GO:0009826	unidimensional cell growth	BP
GO:0009856	pollination	BP
GO:0009860	pollen tube growth	BP
GO:0009932	cell tip growth	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010119	regulation of stomatal movement	BP
GO:0015630	microtubule cytoskeleton	CC
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016049	cell growth	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0017076	purine nucleotide binding	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0017157	regulation of exocytosis	BP
GO:0019001	guanyl nucleotide binding	MF
GO:0019899	enzyme binding	MF
GO:0019900	kinase binding	MF
GO:0019901	protein kinase binding	MF
GO:0022414	reproductive process	BP
GO:0023052	signaling	BP
GO:0030154	cell differentiation	BP
GO:0030832	regulation of actin filament length	BP
GO:0030833	regulation of actin filament polymerization	BP
GO:0030834	regulation of actin filament depolymerization	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032271	regulation of protein polymerization	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032535	regulation of cellular component size	BP
GO:0032549	ribonucleoside binding	MF
GO:0032550	purine ribonucleoside binding	MF
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032561	guanyl ribonucleotide binding	MF
GO:0032794	GTPase activating protein binding	MF
GO:0032870	cellular response to hormone stimulus	BP
GO:0032879	regulation of localization	BP
GO:0032956	regulation of actin cytoskeleton organization	BP
GO:0032970	regulation of actin filament-based process	BP
GO:0032989	cellular component morphogenesis	BP
GO:0033043	regulation of organelle organization	BP
GO:0033993	response to lipid	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0036094	small molecule binding	MF
GO:0040007	growth	BP
GO:0042221	response to chemical	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043244	regulation of protein-containing complex disassembly	BP
GO:0043254	regulation of protein-containing complex assembly	BP
GO:0044087	regulation of cellular component biogenesis	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044706	multi-multicellular organism process	BP
GO:0045177	apical part of cell	CC
GO:0048468	cell development	BP
GO:0048588	developmental cell growth	BP
GO:0048589	developmental growth	BP
GO:0048856	anatomical structure development	BP
GO:0048868	pollen tube development	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051046	regulation of secretion	BP
GO:0051049	regulation of transport	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051493	regulation of cytoskeleton organization	BP
GO:0051640	organelle localization	BP
GO:0051641	cellular localization	BP
GO:0051648	vesicle localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051650	establishment of vesicle localization	BP
GO:0051656	establishment of organelle localization	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051716	cellular response to stimulus	BP
GO:0060560	developmental growth involved in morphogenesis	BP
GO:0060627	regulation of vesicle-mediated transport	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070887	cellular response to chemical stimulus	BP
GO:0071215	cellular response to abscisic acid stimulus	BP
GO:0071229	cellular response to acid chemical	BP
GO:0071310	cellular response to organic substance	BP
GO:0071365	cellular response to auxin stimulus	BP
GO:0071396	cellular response to lipid	BP
GO:0071495	cellular response to endogenous stimulus	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0090066	regulation of anatomical structure size	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097305	response to alcohol	BP
GO:0097306	cellular response to alcohol	BP
GO:0097367	carbohydrate derivative binding	MF
GO:0110053	regulation of actin filament organization	BP
GO:1901265	nucleoside phosphate binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901700	response to oxygen-containing compound	BP
GO:1901701	cellular response to oxygen-containing compound	BP
GO:1901879	regulation of protein depolymerization	BP
GO:1902903	regulation of supramolecular fiber organization	BP
GO:1903530	regulation of secretion by cell	BP

KEGG Term	Name	Description
map04145	Phagosome	Phagocytosis is the process of taking in relatively large particles by a cell, and is a central mechanism in the tissue remodeling, inflammation, and defense against infectious agents. A phagosome is formed when the specific receptors on the phagocyte surface recognize ligands on the particle surface. After formation, nascent phagosomes progressively acquire digestive characteristics. This maturation of phagosomes involves regulated interaction with the other membrane organelles, including recycling endosomes, late endosomes and lysosomes. The fusion of phagosomes and lysosomes releases toxic products that kill most bacteria and degrade them into fragments. However, some bacteria have strategies to escape the bactericidal mechanisms associated with phagocytosis and survive within host phagocytes.