Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
QL01p001313.g
View in Genome Browser
Position
chr1:1310125-1316759 (-)
6634bp
Gene Type
gene
Gene Description (Protein Product)
Phytanoyl-CoA dioxygenase
Organism
Quercus lobata
Also AS AT2G01490

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
QL10p050722.g Electron transfer flavoprotein-ubiquinone oxidoreductase
QL02p049823.g Belongs to the TPP enzyme family
QL12p011360.g Belongs to the acyl-CoA oxidase family
Regulatory gene
QL01p005164.g Myb/SANT-like DNA-binding domain
QL01p023780.g B3 domain-containing protein
QL01p024575.g B3 domain-containing transcription repressor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005575 cellular_component CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0016020 membrane CC
GO:0016491 oxidoreductase activity MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0016706 2-oxoglutarate-dependent dioxygenase activity MF
GO:0044464 obsolete cell part CC
GO:0048244 phytanoyl-CoA dioxygenase activity MF
GO:0051213 dioxygenase activity MF
GO:0055114 obsolete oxidation-reduction process BP
GO:0071944 cell periphery CC
KEGG Term Name Description
map04146 Peroxisome Peroxisomes are essential organelles that play a key role in redox signalling and lipid homeostasis. They contribute to many crucial metabolic processes such as fatty acid oxidation, biosynthesis of ether lipids and free radical detoxification. The biogenesis of peroxisomes starts with the early peroxins PEX3, PEX16 and PEX19 and proceeds via several steps. The import of membrane proteins into peroxisomes needs PEX19 for recognition, targeting and insertion via docking at PEX3. Matrix proteins in the cytosol are recognized by peroxisomal targeting signals (PTS) and transported to the docking complex at the peroxisomal membrane. Peroxisomes' deficiencies lead to severe and often fatal inherited peroxisomal disorders (PD). PDs are usually classified in two groups. The first group is disorders of peroxisome biogenesis which include Zellweger syndrome, and the second group is single peroxisomal enzyme deficiencies.