PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	QL01p007891.g View in Genome Browser
Position	chr1:7890384-7891988 (+) 1604bp
Gene Type	gene
Gene Description (Protein Product)	Nuclear pore complex protein
Organism	Quercus lobata
Also AS	AT1G55540

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	QL09p024696.g atcrm1,atxpo1,hit2,xpo1,xpo1a QL07p041361.g DEAD-box ATP-dependent RNA helicase QL05p020530.g Nuclear pore complex protein NUP35
Regulatory gene	QL01p000848.g Transcription factor QL01p001933.g Myb-related protein QL01p005666.g protein FAR1-RELATED SEQUENCE

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03013	RNA transport	RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.