PPGR - Gene Detail

Basic Information

Gene ID	QL08p064289.g View in Genome Browser
Position	chr8:64286098-64291105 (-) 5007bp
Gene Type	gene
Gene Description (Protein Product)	Nop53 (60S ribosomal biogenesis)
Organism	Quercus lobata
Also AS	AT2G40430

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

QL09p029474.g DEAD-box ATP-dependent RNA helicase

QL12p028379.g U3 small nucleolar RNA-associated protein

QL12p027406.g Ribosome biogenesis protein Nop16

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000027	ribosomal large subunit assembly	BP
GO:0000054	ribosomal subunit export from nucleus	BP
GO:0000055	ribosomal large subunit export from nucleus	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005730	nucleolus	CC
GO:0006403	RNA localization	BP
GO:0006405	RNA export from nucleus	BP
GO:0006611	protein export from nucleus	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006913	nucleocytoplasmic transport	BP
GO:0006996	organelle organization	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0009987	cellular process	BP
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0015931	nucleobase-containing compound transport	BP
GO:0016043	cellular component organization	BP
GO:0019843	rRNA binding	MF
GO:0022607	cellular component assembly	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0022618	ribonucleoprotein complex assembly	BP
GO:0031503	protein-containing complex localization	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0033036	macromolecule localization	BP
GO:0033750	ribosome localization	BP
GO:0034613	protein localization	BP
GO:0034622	protein-containing complex assembly	BP
GO:0042254	ribosome biogenesis	BP
GO:0042255	ribosome assembly	BP
GO:0042273	ribosomal large subunit biogenesis	BP
GO:0042886	amide transport	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045184	establishment of protein localization	BP
GO:0046907	intracellular transport	BP
GO:0050657	nucleic acid transport	BP
GO:0050658	RNA transport	BP
GO:0051168	nuclear export	BP
GO:0051169	nuclear transport	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051236	establishment of RNA localization	BP
GO:0051640	organelle localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051656	establishment of organelle localization	BP
GO:0065003	protein-containing complex assembly	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070727	cellular macromolecule localization	BP
GO:0070925	organelle assembly	BP
GO:0071166	ribonucleoprotein complex localization	BP
GO:0071426	obsolete ribonucleoprotein complex export from nucleus	BP
GO:0071428	obsolete rRNA-containing ribonucleoprotein complex export from nucleus	BP
GO:0071702	organic substance transport	BP
GO:0071705	nitrogen compound transport	BP
GO:0071826	ribonucleoprotein complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0097159	organic cyclic compound binding	MF
GO:1901363	heterocyclic compound binding	MF