PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	QL12p003834.g View in Genome Browser
Position	chr12:3831244-3836052 (+) 4808bp
Gene Type	gene
Gene Description (Protein Product)	Splicing factor 3B subunit
Organism	Quercus lobata
Also AS	AT5G64270

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	QL12p022805.g Component of LSM protein complexes, which are involved in RNA processing QL12p022157.g Small nuclear ribonucleoprotein QL12p018947.g Pre-mRNA-splicing factor ATP-dependent RNA
Regulatory gene	QL01p023780.g B3 domain-containing protein QL01p024575.g B3 domain-containing transcription repressor QL01p032408.g Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.