PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Qrob_T0504590.2.g View in Genome Browser
Position	Qrob_Chr01:4726451-4729301 (-) 2850bp
Gene Type	gene
Gene Description (Protein Product)	Sec-independent protein translocase protein TATC
Organism	Quercus robur
Also AS	AT2G01110

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Qrob_T0525030.2.g Belongs to the SecY SEC61-alpha family Qrob_T0682780.2.g ALBINO3-like protein 1 Qrob_T0602180.2.g 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Regulatory gene	Qrob_T0047280.2.g dof zinc finger protein Qrob_T0068730.2.g dof zinc finger protein Qrob_T0076400.2.g Cyclic dof factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0003674	molecular_function	MF
GO:0005215	transporter activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005886	plasma membrane	CC
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006996	organelle organization	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008320	protein transmembrane transporter activity	MF
GO:0008565	obsolete protein transporter activity	MF
GO:0009507	chloroplast	CC
GO:0009534	chloroplast thylakoid	CC
GO:0009535	chloroplast thylakoid membrane	CC
GO:0009536	plastid	CC
GO:0009566	fertilization	BP
GO:0009567	double fertilization forming a zygote and endosperm	BP
GO:0009579	thylakoid	CC
GO:0009657	plastid organization	BP
GO:0009668	plastid membrane organization	BP
GO:0009977	proton motive force dependent protein transmembrane transporter activity	MF
GO:0009987	cellular process	BP
GO:0010027	thylakoid membrane organization	BP
GO:0015031	protein transport	BP
GO:0015291	secondary active transmembrane transporter activity	MF
GO:0015399	primary active transmembrane transporter activity	MF
GO:0015405	ATPase-coupled transmembrane transporter activity	MF
GO:0015450	protein-transporting ATPase activity	MF
GO:0015833	peptide transport	BP
GO:0016020	membrane	CC
GO:0016021	membrane	CC
GO:0016043	cellular component organization	BP
GO:0019953	sexual reproduction	BP
GO:0022414	reproductive process	BP
GO:0022804	active transmembrane transporter activity	MF
GO:0022857	transmembrane transporter activity	MF
GO:0022884	macromolecule transmembrane transporter activity	MF
GO:0031224	obsolete intrinsic component of membrane	CC
GO:0031360	obsolete intrinsic component of thylakoid membrane	CC
GO:0031361	obsolete integral component of thylakoid membrane	CC
GO:0031976	plastid thylakoid	CC
GO:0031984	organelle subcompartment	CC
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033281	TAT protein transport complex	CC
GO:0034357	photosynthetic membrane	CC
GO:0034613	protein localization	BP
GO:0042651	thylakoid membrane	CC
GO:0042886	amide transport	BP
GO:0042887	amide transmembrane transporter activity	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043235	receptor complex	CC
GO:0043953	protein transport by the Tat complex	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044436	obsolete thylakoid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044459	obsolete plasma membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0045184	establishment of protein localization	BP
GO:0046907	intracellular transport	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051704	obsolete multi-organism process	BP
GO:0055035	plastid thylakoid membrane	CC
GO:0055085	transmembrane transport	BP
GO:0061024	membrane organization	BP
GO:0065002	intracellular protein transmembrane transport	BP
GO:0070727	cellular macromolecule localization	BP
GO:0071702	organic substance transport	BP
GO:0071705	nitrogen compound transport	BP
GO:0071806	protein transmembrane transport	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0098796	membrane protein complex	CC
GO:0098797	plasma membrane protein complex	CC
GO:1904680	peptide transmembrane transporter activity	MF

KEGG Term	Name	Description
map03060	Protein export	The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.