PPGR - Gene Detail

Basic Information

Gene ID	Qrob_T0519350.2.g View in Genome Browser
Position	Qrob_Chr10:31038946-31044923 (-) 5977bp
Gene Type	gene
Gene Description (Protein Product)	phosphatase 2A 55 kDa regulatory subunit B
Organism	Quercus robur
Also AS	AT1G17720

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Qrob_T0666860.2.g Serine threonine-protein phosphatase 2A 65 kDa regulatory subunit A

Qrob_T0610020.2.g Serine threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform-like

Qrob_T0609790.2.g The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000159	protein phosphatase type 2A complex	CC
GO:0000278	mitotic cell cycle	BP
GO:0003674	molecular_function	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006464	protein modification process	BP
GO:0006470	protein dephosphorylation	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007049	cell cycle	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008287	protein serine/threonine phosphatase complex	CC
GO:0009987	cellular process	BP
GO:0010921	regulation of phosphatase activity	BP
GO:0016311	dephosphorylation	BP
GO:0019208	phosphatase regulator activity	MF
GO:0019220	regulation of phosphate metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019888	protein phosphatase regulator activity	MF
GO:0030234	enzyme regulator activity	MF
GO:0031323	regulation of cellular metabolic process	BP
GO:0031399	regulation of protein modification process	BP
GO:0032268	regulation of protein metabolic process	BP
GO:0032502	developmental process	BP
GO:0032991	protein-containing complex	CC
GO:0035303	regulation of dephosphorylation	BP
GO:0035304	regulation of protein dephosphorylation	BP
GO:0036211	protein modification process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043412	macromolecule modification	BP
GO:0043666	regulation of phosphoprotein phosphatase activity	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050794	regulation of cellular process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051174	regulation of phosphorus metabolic process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051336	regulation of hydrolase activity	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070262	peptidyl-serine dephosphorylation	BP
GO:0071704	organic substance metabolic process	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0098772	molecular function regulator activity	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1902494	catalytic complex	CC
GO:1903293	phosphatase complex	CC

KEGG Term	Name	Description
map03015	mRNA surveillance pathway	The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.