PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Qrob_T0564880.2.g View in Genome Browser
Position	Qrob_Chr12:30413643-30418702 (-) 5059bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the cyclin family
Organism	Quercus robur
Also AS	AT5G11300

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Qrob_T0714230.2.g Belongs to the protein kinase superfamily

Qrob_T0632380.2.g Belongs to the protein kinase superfamily

Qrob_T0658120.2.g Belongs to the cyclin family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000070	mitotic sister chromatid segregation	BP
GO:0000082	G1/S transition of mitotic cell cycle	BP
GO:0000083	regulation of transcription involved in G1/S transition of mitotic cell cycle	BP
GO:0000086	G2/M transition of mitotic cell cycle	BP
GO:0000278	mitotic cell cycle	BP
GO:0000280	nuclear division	BP
GO:0000307	cyclin-dependent protein kinase holoenzyme complex	CC
GO:0000819	sister chromatid segregation	BP
GO:0001932	regulation of protein phosphorylation	BP
GO:0001939	female pronucleus	CC
GO:0001940	male pronucleus	CC
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005737	cytoplasm	CC
GO:0005819	spindle	CC
GO:0005829	cytosol	CC
GO:0005856	cytoskeleton	CC
GO:0006325	chromatin organization	BP
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006464	protein modification process	BP
GO:0006468	protein phosphorylation	BP
GO:0006508	proteolysis	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007049	cell cycle	BP
GO:0007059	chromosome segregation	BP
GO:0007088	regulation of mitotic nuclear division	BP
GO:0007096	regulation of exit from mitosis	BP
GO:0007127	meiosis I	BP
GO:0007140	male meiotic nuclear division	BP
GO:0007141	male meiosis I	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007264	small GTPase mediated signal transduction	BP
GO:0007265	Ras protein signal transduction	BP
GO:0007275	multicellular organism development	BP
GO:0007276	gamete generation	BP
GO:0007283	spermatogenesis	BP
GO:0007346	regulation of mitotic cell cycle	BP
GO:0007399	nervous system development	BP
GO:0007405	neuroblast proliferation	BP
GO:0007422	peripheral nervous system development	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008283	cell population proliferation	BP
GO:0008284	positive regulation of cell population proliferation	BP
GO:0008356	asymmetric cell division	BP
GO:0009790	embryo development	BP
GO:0009794	regulation of mitotic cell cycle, embryonic	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010564	regulation of cell cycle process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010628	positive regulation of gene expression	BP
GO:0010639	negative regulation of organelle organization	BP
GO:0010948	negative regulation of cell cycle process	BP
GO:0010965	regulation of mitotic sister chromatid separation	BP
GO:0015630	microtubule cytoskeleton	CC
GO:0016043	cellular component organization	BP
GO:0016310	phosphorylation	BP
GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	MF
GO:0016569	obsolete covalent chromatin modification	BP
GO:0016570	histone modification	BP
GO:0016572	obsolete histone phosphorylation	BP
GO:0016579	protein deubiquitination	BP
GO:0017145	stem cell division	BP
GO:0019207	kinase regulator activity	MF
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019220	regulation of phosphate metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019887	protein kinase regulator activity	MF
GO:0019899	enzyme binding	MF
GO:0019900	kinase binding	MF
GO:0019901	protein kinase binding	MF
GO:0019904	protein domain specific binding	MF
GO:0019953	sexual reproduction	BP
GO:0022008	neurogenesis	BP
GO:0022402	cell cycle process	BP
GO:0022412	cellular process involved in reproduction in multicellular organism	BP
GO:0022414	reproductive process	BP
GO:0023052	signaling	BP
GO:0030071	regulation of mitotic metaphase/anaphase transition	BP
GO:0030154	cell differentiation	BP
GO:0030234	enzyme regulator activity	MF
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0031399	regulation of protein modification process	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032268	regulation of protein metabolic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032504	multicellular organism reproduction	BP
GO:0032991	protein-containing complex	CC
GO:0033043	regulation of organelle organization	BP
GO:0033044	regulation of chromosome organization	BP
GO:0033045	regulation of sister chromatid segregation	BP
GO:0033046	negative regulation of sister chromatid segregation	BP
GO:0033047	regulation of mitotic sister chromatid segregation	BP
GO:0033048	negative regulation of mitotic sister chromatid segregation	BP
GO:0033301	cell cycle comprising mitosis without cytokinesis	BP
GO:0035186	syncytial blastoderm mitotic cell cycle	BP
GO:0035556	intracellular signal transduction	BP
GO:0035561	regulation of chromatin binding	BP
GO:0036211	protein modification process	BP
GO:0036445	neuronal stem cell division	BP
GO:0042127	regulation of cell population proliferation	BP
GO:0042325	regulation of phosphorylation	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0043549	regulation of kinase activity	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0044770	cell cycle phase transition	BP
GO:0044772	mitotic cell cycle phase transition	BP
GO:0044839	cell cycle G2/M phase transition	BP
GO:0044843	cell cycle G1/S phase transition	BP
GO:0045120	pronucleus	CC
GO:0045165	cell fate commitment	BP
GO:0045170	spectrosome	CC
GO:0045448	mitotic cell cycle, embryonic	BP
GO:0045786	negative regulation of cell cycle	BP
GO:0045787	positive regulation of cell cycle	BP
GO:0045839	negative regulation of mitotic nuclear division	BP
GO:0045841	negative regulation of mitotic metaphase/anaphase transition	BP
GO:0045859	regulation of protein kinase activity	BP
GO:0045893	positive regulation of DNA-templated transcription	BP
GO:0045930	negative regulation of mitotic cell cycle	BP
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0045995	regulation of embryonic development	BP
GO:0048103	somatic stem cell division	BP
GO:0048145	regulation of fibroblast proliferation	BP
GO:0048146	positive regulation of fibroblast proliferation	BP
GO:0048232	male gamete generation	BP
GO:0048285	organelle fission	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048580	regulation of post-embryonic development	BP
GO:0048582	positive regulation of post-embryonic development	BP
GO:0048609	multicellular organismal reproductive process	BP
GO:0048699	generation of neurons	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051094	positive regulation of developmental process	BP
GO:0051098	regulation of binding	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051129	negative regulation of cellular component organization	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051174	regulation of phosphorus metabolic process	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051240	positive regulation of multicellular organismal process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051254	positive regulation of RNA metabolic process	BP
GO:0051276	chromosome organization	BP
GO:0051301	cell division	BP
GO:0051321	meiotic cell cycle	BP
GO:0051338	regulation of transferase activity	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051716	cellular response to stimulus	BP
GO:0051726	regulation of cell cycle	BP
GO:0051783	regulation of nuclear division	BP
GO:0051784	negative regulation of nuclear division	BP
GO:0051983	regulation of chromosome segregation	BP
GO:0051985	negative regulation of chromosome segregation	BP
GO:0055057	neuroblast division	BP
GO:0055059	asymmetric neuroblast division	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061351	neural precursor cell proliferation	BP
GO:0061695	transferase complex, transferring phosphorus-containing groups	CC
GO:0061982	meiosis I cell cycle process	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070646	protein modification by small protein removal	BP
GO:0070647	protein modification by small protein conjugation or removal	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0072089	stem cell proliferation	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090068	positive regulation of cell cycle process	BP
GO:0097123	cyclin A1-CDK2 complex	CC
GO:0097124	cyclin A2-CDK2 complex	CC
GO:0098722	asymmetric stem cell division	BP
GO:0098772	molecular function regulator activity	MF
GO:0098813	nuclear chromosome segregation	BP
GO:0140013	meiotic nuclear division	BP
GO:0140014	mitotic nuclear division	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901987	regulation of cell cycle phase transition	BP
GO:1901988	negative regulation of cell cycle phase transition	BP
GO:1901989	positive regulation of cell cycle phase transition	BP
GO:1901990	regulation of mitotic cell cycle phase transition	BP
GO:1901991	negative regulation of mitotic cell cycle phase transition	BP
GO:1902099	regulation of metaphase/anaphase transition of cell cycle	BP
GO:1902100	negative regulation of metaphase/anaphase transition of cell cycle	BP
GO:1902494	catalytic complex	CC
GO:1902554	serine/threonine protein kinase complex	CC
GO:1902680	positive regulation of RNA biosynthetic process	BP
GO:1902806	regulation of cell cycle G1/S phase transition	BP
GO:1902808	positive regulation of cell cycle G1/S phase transition	BP
GO:1902911	protein kinase complex	CC
GO:1903046	meiotic cell cycle process	BP
GO:1903047	mitotic cell cycle process	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903508	positive regulation of nucleic acid-templated transcription	BP
GO:1905818	regulation of chromosome separation	BP
GO:1905819	negative regulation of chromosome separation	BP
GO:1990234	transferase complex	CC
GO:2000026	regulation of multicellular organismal development	BP
GO:2000038	regulation of stomatal complex development	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000123	positive regulation of stomatal complex development	BP
GO:2000816	negative regulation of mitotic sister chromatid separation	BP
GO:2001141	regulation of RNA biosynthetic process	BP
GO:2001251	negative regulation of chromosome organization	BP

KEGG Term	Name	Description
map03008	Ribosome biogenesis in eukaryotes	Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.