PPGR - Gene Detail

Basic Information

Gene ID	Qrob_T0612380.2.g View in Genome Browser
Position	Qrob_Chr09:47606685-47609455 (+) 2770bp
Gene Type	gene
Gene Description (Protein Product)	Squalene epoxidase 3-like
Organism	Quercus robur
Also AS	AT1G58440

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Qrob_T0684400.2.g Belongs to the terpene cyclase mutase family

Qrob_T0684360.2.g Belongs to the terpene cyclase mutase family

Qrob_T0684390.2.g Belongs to the terpene cyclase mutase family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0001101	response to acid chemical	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004497	monooxygenase activity	MF
GO:0004506	squalene monooxygenase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0006629	lipid metabolic process	BP
GO:0006694	steroid biosynthetic process	BP
GO:0006950	response to stress	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008202	steroid metabolic process	BP
GO:0008610	lipid biosynthetic process	BP
GO:0009058	biosynthetic process	BP
GO:0009611	response to wounding	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009725	response to hormone	BP
GO:0009753	response to jasmonic acid	BP
GO:0010033	response to organic substance	BP
GO:0012505	endomembrane system	CC
GO:0016125	sterol metabolic process	BP
GO:0016126	sterol biosynthetic process	BP
GO:0016491	oxidoreductase activity	MF
GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	MF
GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	MF
GO:0042221	response to chemical	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044238	primary metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0050896	response to stimulus	BP
GO:0055114	obsolete oxidation-reduction process	BP
GO:0071704	organic substance metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901615	organic hydroxy compound metabolic process	BP
GO:1901617	organic hydroxy compound biosynthetic process	BP
GO:1901700	response to oxygen-containing compound	BP

KEGG Term	Name	Description
map01110	Biosynthesis of secondary metabolites	-
map01100	Metabolic pathways	-
map00909	Sesquiterpenoid biosynthesis	Sesquiterpenoids (C15 terpenoids) are a group of terpenoids consisting of three isoprene units. They are derive from farnesyl diphosphate (FPP) and can be cyclized to produce various skeletal structures. Sesquiterpenoid biosynthesis begins with the loss of diphosphate from FPP under the action of sesquiterpene synthesis enzymes, generating an allylic cation that is highly susceptible to intramolecular attacks. Cyclization of the farnesyl cation may take place onto either of the remaining double bonds with the result that 6-, 10-, or 11-membered rings may be formed. Many sesquiterpenoids have been isolated from plants, fungi, marine organisms, and Streptomyces species. This map shows a few examples of acyclic and cyclic sesquiterpenoids.
map00100	Steroid biosynthesis	-