PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Qrob_T0740750.2.g View in Genome Browser
Position	Qrob_Chr02:23127116-23132696 (-) 5580bp
Gene Type	gene
Gene Description (Protein Product)	Pre-mRNA-splicing factor
Organism	Quercus robur
Also AS	AT1G65660

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Qrob_T0743120.2.g splicing factor Qrob_T0760110.2.g Ras-induced vulval development antagonist Qrob_T0747490.2.g Kinetochore protein NDC80 homolog
Regulatory gene	Qrob_T0013730.2.g ZINC FINGER protein Qrob_T0021910.2.g Myb/SANT-like DNA-binding domain Qrob_T0025120.2.g transcriptional regulator

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.