Basic Information
Gene ID
gene-DKX38_017422
Position
CM018582.1:8881640-8889633 (+)
7993bp
Gene Type
gene
Gene Description (Protein Product)
Cell differentiation protein
Organism
Also AS AT3G20800

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-DKX38_027886 CCR4-associated factor 1 homolog
gene-DKX38_023995 Encoded by
gene-DKX38_027754 CCR4-associated factor 1 homolog
Regulatory gene
gene-DKX38_000174 Belongs to the GRAS family
gene-DKX38_000322 ZINC FINGER protein
gene-DKX38_000481 ZINC FINGER protein

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.