PPGR - Gene Detail

Basic Information

Gene ID	gene-DKX38_026898 View in Genome Browser
Position	CM018588.1:8246197-8247684 (+) 1487bp
Gene Type	gene
Gene Description (Protein Product)	RNA exonuclease
Organism	Salix brachista
Also AS	AT3G27970

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-DKX38_028501 tRNA (adenine(58)-N(1))-methyltransferase

gene-DKX38_028506 tRNA (adenine(58)-N(1))-methyltransferase

gene-DKX38_028485 tRNA (adenine(58)-N(1))-methyltransferase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000027	ribosomal large subunit assembly	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004518	nuclease activity	MF
GO:0004527	exonuclease activity	MF
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008408	3'-5' exonuclease activity	MF
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0016043	cellular component organization	BP
GO:0016070	RNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0016787	hydrolase activity	MF
GO:0016788	hydrolase activity, acting on ester bonds	MF
GO:0022607	cellular component assembly	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0022618	ribonucleoprotein complex assembly	BP
GO:0034470	ncRNA processing	BP
GO:0034622	protein-containing complex assembly	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0042254	ribosome biogenesis	BP
GO:0042255	ribosome assembly	BP
GO:0042273	ribosomal large subunit biogenesis	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0065003	protein-containing complex assembly	BP
GO:0070925	organelle assembly	BP
GO:0071704	organic substance metabolic process	BP
GO:0071826	ribonucleoprotein complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090305	nucleic acid phosphodiester bond hydrolysis	BP
GO:1901360	organic cyclic compound metabolic process	BP