Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Sapur.017G045900.v5.1
View in Genome Browser
Position
Chr17:4347816-4351702 (+)
3886bp
Gene Type
gene
Gene Description (Protein Product)
Functions as actin-binding component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks. Seems to contact the mother actin filament
Organism
Salix purpurea
Also AS AT4G14147

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Sapur.018G096500.v5.1 Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks
Sapur.019G020600.v5.1 Belongs to the actin family
Sapur.017G106300.v5.1 Pyridoxal

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005856 cytoskeleton CC
GO:0005885 Arp2/3 protein complex CC
GO:0005938 cell cortex CC
GO:0006810 transport BP
GO:0006887 exocytosis BP
GO:0006897 endocytosis BP
GO:0006909 phagocytosis BP
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0007015 actin filament organization BP
GO:0008064 regulation of actin polymerization or depolymerization BP
GO:0008150 biological_process BP
GO:0008154 actin polymerization or depolymerization BP
GO:0009987 cellular process BP
GO:0010638 positive regulation of organelle organization BP
GO:0012506 vesicle membrane CC
GO:0015629 actin cytoskeleton CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016192 vesicle-mediated transport BP
GO:0022607 cellular component assembly BP
GO:0030029 actin filament-based process BP
GO:0030036 actin cytoskeleton organization BP
GO:0030041 actin filament polymerization BP
GO:0030139 endocytic vesicle CC
GO:0030175 filopodium CC
GO:0030659 cytoplasmic vesicle membrane CC
GO:0030666 endocytic vesicle membrane CC
GO:0030670 phagocytic vesicle membrane CC
GO:0030832 regulation of actin filament length BP
GO:0030833 regulation of actin filament polymerization BP
GO:0030838 positive regulation of actin filament polymerization BP
GO:0030863 cortical cytoskeleton CC
GO:0030864 cortical actin cytoskeleton CC
GO:0031090 organelle membrane CC
GO:0031143 pseudopodium CC
GO:0031252 cell leading edge CC
GO:0031334 positive regulation of protein-containing complex assembly BP
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032271 regulation of protein polymerization BP
GO:0032273 positive regulation of protein polymerization BP
GO:0032535 regulation of cellular component size BP
GO:0032940 secretion by cell BP
GO:0032956 regulation of actin cytoskeleton organization BP
GO:0032970 regulation of actin filament-based process BP
GO:0032991 protein-containing complex CC
GO:0033043 regulation of organelle organization BP
GO:0034622 protein-containing complex assembly BP
GO:0042995 cell projection CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043254 regulation of protein-containing complex assembly BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044087 regulation of cellular component biogenesis BP
GO:0044089 positive regulation of cellular component biogenesis BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044448 obsolete cell cortex part CC
GO:0044464 obsolete cell part CC
GO:0045010 actin nucleation BP
GO:0045335 phagocytic vesicle CC
GO:0046903 secretion BP
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051128 regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051258 protein polymerization BP
GO:0051493 regulation of cytoskeleton organization BP
GO:0051495 positive regulation of cytoskeleton organization BP
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0090066 regulation of anatomical structure size BP
GO:0097435 supramolecular fiber organization BP
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098657 import into cell BP
GO:0098805 membrane CC
GO:0098858 actin-based cell projection CC
GO:0099568 cytoplasmic region CC
GO:0110053 regulation of actin filament organization BP
GO:0120025 plasma membrane bounded cell projection CC
GO:1902903 regulation of supramolecular fiber organization BP
GO:1902905 positive regulation of supramolecular fiber organization BP
GO:0000001 mitochondrion inheritance BP
GO:0000147 actin cortical patch assembly BP
GO:0000902 cell morphogenesis BP
GO:0001667 ameboidal-type cell migration BP
GO:0002009 morphogenesis of an epithelium BP
GO:0002252 immune effector process BP
GO:0002253 activation of immune response BP
GO:0002376 immune system process BP
GO:0002429 immune response-activating cell surface receptor signaling pathway BP
GO:0002431 Fc receptor mediated stimulatory signaling pathway BP
GO:0002433 immune response-regulating cell surface receptor signaling pathway involved in phagocytosis BP
GO:0002682 regulation of immune system process BP
GO:0002684 positive regulation of immune system process BP
GO:0002757 immune response-activating signaling pathway BP
GO:0002764 immune response-regulating signaling pathway BP
GO:0002768 immune response-regulating cell surface receptor signaling pathway BP
GO:0003674 molecular_function MF
GO:0003779 actin binding MF
GO:0005198 structural molecule activity MF
GO:0005200 structural constituent of cytoskeleton MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0006928 obsolete movement of cell or subcellular component BP
GO:0006950 response to stress BP
GO:0007005 mitochondrion organization BP
GO:0007154 cell communication BP
GO:0007155 cell adhesion BP
GO:0007165 signal transduction BP
GO:0007166 cell surface receptor signaling pathway BP
GO:0007167 enzyme-linked receptor protein signaling pathway BP
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway BP
GO:0007275 multicellular organism development BP
GO:0008092 cytoskeletal protein binding MF
GO:0008360 regulation of cell shape BP
GO:0009611 response to wounding BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009790 embryo development BP
GO:0009888 tissue development BP
GO:0010631 epithelial cell migration BP
GO:0016331 morphogenesis of embryonic epithelium BP
GO:0016477 cell migration BP
GO:0019899 enzyme binding MF
GO:0022603 regulation of anatomical structure morphogenesis BP
GO:0022604 regulation of cell morphogenesis BP
GO:0022610 obsolete biological adhesion BP
GO:0023052 signaling BP
GO:0030030 cell projection organization BP
GO:0030031 cell projection assembly BP
GO:0030479 actin cortical patch CC
GO:0030865 cortical cytoskeleton organization BP
GO:0030866 cortical actin cytoskeleton organization BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032989 cellular component morphogenesis BP
GO:0033627 cell adhesion mediated by integrin BP
GO:0034314 Arp2/3 complex-mediated actin nucleation BP
GO:0038093 Fc receptor signaling pathway BP
GO:0038094 Fc-gamma receptor signaling pathway BP
GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis BP
GO:0040011 locomotion BP
GO:0042060 wound healing BP
GO:0044396 actin cortical patch organization BP
GO:0048013 ephrin receptor signaling pathway BP
GO:0048308 organelle inheritance BP
GO:0048311 mitochondrion distribution BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0048598 embryonic morphogenesis BP
GO:0048729 tissue morphogenesis BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0048870 cell motility BP
GO:0050776 regulation of immune response BP
GO:0050778 positive regulation of immune response BP
GO:0050793 regulation of developmental process BP
GO:0050896 response to stimulus BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051646 mitochondrion localization BP
GO:0051674 localization of cell BP
GO:0051716 cellular response to stimulus BP
GO:0060429 epithelium development BP
GO:0061024 membrane organization BP
GO:0061645 endocytic patch CC
GO:0090130 tissue migration BP
GO:0090132 epithelium migration BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
map01100 Metabolic pathways -
map00750 Vitamin B6 metabolism -