Basic Information
Gene ID
gene-IMY05_001G0000600
Position
CM029799.1:35703-44175 (+)
8472bp
Gene Type
gene
Gene Description (Protein Product)
"WD40 region of Ge1
Organism
Also AS AT3G13300

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_001G0314700 Enhancer of mRNA-decapping protein
Regulatory gene
gene-IMY05_001G0009700 Belongs to the GRAS family
gene-IMY05_001G0020000 Belongs to the GRAS family
gene-IMY05_001G0024600 ABSCISIC ACID-INSENSITIVE 5-like protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.