Basic Information
Gene ID
gene-IMY05_009G0132800
Position
CM029807.1:10710611-10714730 (+)
4119bp
Gene Type
gene
Gene Description (Protein Product)
mRNA-decapping enzyme-like
Organism
Also AS AT1G08370

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_010G0177300 mRNA-decapping enzyme subunit 2-like
gene-IMY05_013G0035500 5'-3' exoribonuclease
gene-IMY05_013G0067500 5'-3' exoribonuclease
Regulatory gene
gene-IMY05_001G0042000 RWP-RK domain-containing protein
gene-IMY05_001G0055000 Heat Stress Transcription Factor
gene-IMY05_001G0065700 Dof domain, zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.