PPGR - Gene Detail

Gene ID	gene-IMY05_011G0085600 View in Genome Browser
Position	CM029809.1:11495830-11503799 (+) 7969bp
Gene Type	gene
Gene Description (Protein Product)	spa1-related
Organism	Salix suchowensis
Also AS	AT3G15354

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	gene-IMY05_014G0131200 E3 ubiquitin-protein ligase gene-IMY05_014G0073200 Protein SUPPRESSOR OF PHYA-105 gene-IMY05_016G0079000 WD domain, G-beta repeat
Regulatory gene	gene-IMY05_002G0021500 Protein BASIC PENTACYSTEINE6-like gene-IMY05_004G0119500 Protein BASIC PENTACYSTEINE4-like gene-IMY05_004G0124700 Protein BASIC PENTACYSTEINE4-like

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Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

GO Term	Description	GO Category
GO:0000151	ubiquitin ligase complex	CC
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0008150	biological_process	BP
GO:0009314	response to radiation	BP
GO:0009416	response to light stimulus	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009637	response to blue light	BP
GO:0031461	cullin-RING ubiquitin ligase complex	CC
GO:0032991	protein-containing complex	CC
GO:0042802	identical protein binding	MF
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0050896	response to stimulus	BP
GO:0080008	Cul4-RING E3 ubiquitin ligase complex	CC
GO:1902494	catalytic complex	CC
GO:1990234	transferase complex	CC

KEGG Term	Name	Description
map04712	Circadian rhythm - plant	-
map04120	Ubiquitin mediated proteolysis	Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.