Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_011G0100700
View in Genome Browser
Position
CM029809.1:13855372-13859996 (-)
4624bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the class I-like SAM-binding methyltransferase superfamily. mRNA cap 0 methyltransferase family
Organism
Salix suchowensis
Also AS AT3G20650

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_017G0049900 Adenosylhomocysteinase
gene-IMY05_017G0047600 Adenosylhomocysteinase
gene-IMY05_017G0006800 Nuclear cap-binding protein subunit
Regulatory gene
gene-IMY05_001G0028100 Zinc finger protein
gene-IMY05_001G0084600 ZINC FINGER protein
gene-IMY05_001G0091900 zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0001510 RNA methylation BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004482 mRNA (guanine-N7-)-methyltransferase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005845 mRNA cap binding complex CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006370 7-methylguanosine mRNA capping BP
GO:0006396 RNA processing BP
GO:0006397 mRNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008168 methyltransferase activity MF
GO:0008170 N-methyltransferase activity MF
GO:0008173 RNA methyltransferase activity MF
GO:0008174 mRNA methyltransferase activity MF
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity MF
GO:0009451 RNA modification BP
GO:0009452 7-methylguanosine RNA capping BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016556 mRNA modification BP
GO:0016740 transferase activity MF
GO:0016741 transferase activity, transferring one-carbon groups MF
GO:0032259 methylation BP
GO:0032991 protein-containing complex CC
GO:0034518 RNA cap binding complex CC
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0036260 RNA capping BP
GO:0036265 RNA (guanine-N7)-methylation BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0043414 macromolecule methylation BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0071704 organic substance metabolic process BP
GO:0080009 mRNA methylation BP
GO:0090304 nucleic acid metabolic process BP
GO:0106005 RNA 5'-cap (guanine-N7)-methylation BP
GO:0140098 catalytic activity, acting on RNA MF
GO:1901360 organic cyclic compound metabolic process BP
KEGG Term Name Description
map03015 mRNA surveillance pathway The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.