Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_014G0103900
View in Genome Browser
Position
CM029812.1:8049963-8054744 (+)
4781bp
Gene Type
gene
Gene Description (Protein Product)
RNA recognition motif
Organism
Salix suchowensis
Also AS AT1G02840

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_015G0002900 Pre-mRNA-splicing factor
gene-IMY05_C4843000300 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal
gene-IMY05_C4522001000 Splicing factor 3B subunit 1
Regulatory gene
gene-IMY05_001G0057000 Homeobox-leucine zipper protein
gene-IMY05_001G0065700 Dof domain, zinc finger
gene-IMY05_001G0068000 Dof domain, zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.