PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	gene-IMY05_014G0152800 View in Genome Browser
Position	CM029812.1:12648124-12656518 (+) 8394bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the AAA ATPase family
Organism	Salix suchowensis
Also AS	AT2G20140

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	gene-IMY05_016G0117700 26S proteasome non-ATPase regulatory subunit gene-IMY05_C4674000300 26S proteasome non-atpase regulatory subunit gene-IMY05_017G0007000 26S proteasome non-ATPase regulatory subunit
Regulatory gene	gene-IMY05_001G0046100 Squamosa promoter-binding-like protein gene-IMY05_001G0065700 Dof domain, zinc finger gene-IMY05_001G0068000 Dof domain, zinc finger

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000502	proteasome complex	CC
GO:0002376	immune system process	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0005838	proteasome regulatory particle	CC
GO:0005886	plasma membrane	CC
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006357	regulation of transcription by RNA polymerase II	BP
GO:0006508	proteolysis	BP
GO:0006511	ubiquitin-dependent protein catabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006952	defense response	BP
GO:0006955	immune response	BP
GO:0007275	multicellular organism development	BP
GO:0007276	gamete generation	BP
GO:0007292	female gamete generation	BP
GO:0008134	transcription factor binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008540	proteasome regulatory particle, base subcomplex	CC
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009408	response to heat	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009791	post-embryonic development	BP
GO:0009888	tissue development	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009894	regulation of catabolic process	BP
GO:0009896	positive regulation of catabolic process	BP
GO:0009933	meristem structural organization	BP
GO:0009965	leaf morphogenesis	BP
GO:0009987	cellular process	BP
GO:0010015	root morphogenesis	BP
GO:0010016	shoot system morphogenesis	BP
GO:0010033	response to organic substance	BP
GO:0010035	response to inorganic substance	BP
GO:0010038	response to metal ion	BP
GO:0010073	meristem maintenance	BP
GO:0010074	maintenance of meristem identity	BP
GO:0010078	maintenance of root meristem identity	BP
GO:0010101	post-embryonic root morphogenesis	BP
GO:0010102	lateral root morphogenesis	BP
GO:0010243	response to organonitrogen compound	BP
GO:0010311	lateral root formation	BP
GO:0010468	regulation of gene expression	BP
GO:0010498	proteasomal protein catabolic process	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010628	positive regulation of gene expression	BP
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0016887	ATP hydrolysis activity	MF
GO:0017025	TBP-class protein binding	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019827	stem cell population maintenance	BP
GO:0019941	modification-dependent protein catabolic process	BP
GO:0019953	sexual reproduction	BP
GO:0022414	reproductive process	BP
GO:0022607	cellular component assembly	BP
GO:0022622	root system development	BP
GO:0022624	proteasome accessory complex	CC
GO:0030162	regulation of proteolysis	BP
GO:0030163	protein catabolic process	BP
GO:0030433	ubiquitin-dependent ERAD pathway	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0031329	regulation of cellular catabolic process	BP
GO:0031331	positive regulation of cellular catabolic process	BP
GO:0031334	positive regulation of protein-containing complex assembly	BP
GO:0031595	nuclear proteasome complex	CC
GO:0031597	cytosolic proteasome complex	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032268	regulation of protein metabolic process	BP
GO:0032270	positive regulation of protein metabolic process	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032504	multicellular organism reproduction	BP
GO:0032991	protein-containing complex	CC
GO:0033554	cellular response to stress	BP
GO:0034622	protein-containing complex assembly	BP
GO:0034976	response to endoplasmic reticulum stress	BP
GO:0035266	meristem growth	BP
GO:0035966	response to topologically incorrect protein	BP
GO:0036402	proteasome-activating activity	MF
GO:0036503	ERAD pathway	BP
GO:0040007	growth	BP
GO:0042176	regulation of protein catabolic process	BP
GO:0042221	response to chemical	BP
GO:0042623	ATP hydrolysis activity	MF
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043248	proteasome assembly	BP
GO:0043254	regulation of protein-containing complex assembly	BP
GO:0043632	modification-dependent macromolecule catabolic process	BP
GO:0043933	protein-containing complex organization	BP
GO:0044085	cellular component biogenesis	BP
GO:0044087	regulation of cellular component biogenesis	BP
GO:0044089	positive regulation of cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044257	protein catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044445	obsolete cytosolic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0045087	innate immune response	BP
GO:0045732	positive regulation of protein catabolic process	BP
GO:0045862	positive regulation of proteolysis	BP
GO:0045893	positive regulation of DNA-templated transcription	BP
GO:0045898	regulation of RNA polymerase II transcription preinitiation complex assembly	BP
GO:0045899	positive regulation of RNA polymerase II transcription preinitiation complex assembly	BP
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0045944	positive regulation of transcription by RNA polymerase II	BP
GO:0046686	response to cadmium ion	BP
GO:0048232	male gamete generation	BP
GO:0048364	root development	BP
GO:0048366	leaf development	BP
GO:0048367	shoot system development	BP
GO:0048507	meristem development	BP
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048527	lateral root development	BP
GO:0048528	post-embryonic root development	BP
GO:0048532	anatomical structure arrangement	BP
GO:0048589	developmental growth	BP
GO:0048609	multicellular organismal reproductive process	BP
GO:0048646	anatomical structure formation involved in morphogenesis	BP
GO:0048731	system development	BP
GO:0048827	phyllome development	BP
GO:0048829	root cap development	BP
GO:0048856	anatomical structure development	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051130	positive regulation of cellular component organization	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051247	positive regulation of protein metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051254	positive regulation of RNA metabolic process	BP
GO:0051603	proteolysis involved in protein catabolic process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051716	cellular response to stimulus	BP
GO:0051788	response to misfolded protein	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060260	regulation of transcription initiation by RNA polymerase II	BP
GO:0060261	positive regulation of transcription initiation by RNA polymerase II	BP
GO:0060968	obsolete regulation of gene silencing	BP
GO:0061136	regulation of proteasomal protein catabolic process	BP
GO:0065003	protein-containing complex assembly	BP
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0080090	regulation of primary metabolic process	BP
GO:0090351	seedling development	BP
GO:0090696	post-embryonic plant organ development	BP
GO:0090697	post-embryonic plant organ morphogenesis	BP
GO:0090698	post-embryonic plant morphogenesis	BP
GO:0098727	maintenance of cell number	BP
GO:0099402	plant organ development	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901698	response to nitrogen compound	BP
GO:1901800	positive regulation of proteasomal protein catabolic process	BP
GO:1902494	catalytic complex	CC
GO:1902680	positive regulation of RNA biosynthetic process	BP
GO:1903050	regulation of proteolysis involved in protein catabolic process	BP
GO:1903052	positive regulation of proteolysis involved in protein catabolic process	BP
GO:1903362	regulation of protein catabolic process	BP
GO:1903364	positive regulation of protein catabolic process	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903508	positive regulation of nucleic acid-templated transcription	BP
GO:1905368	peptidase complex	CC
GO:1905369	endopeptidase complex	CC
GO:1905392	plant organ morphogenesis	BP
GO:1905393	plant organ formation	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2000142	regulation of DNA-templated transcription initiation	BP
GO:2000144	positive regulation of DNA-templated transcription initiation	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map03050	Proteasome	The proteasome is a protein-destroying apparatus involved in many essential cellular functions, such as regulation of cell cycle, cell differentiation, signal transduction pathways, antigen processing for appropriate immune responses, stress signaling, inflammatory responses, and apoptosis. It is capable of degrading a variety of cellular proteins in a rapid and timely fashion and most substrate proteins are modified by ubiquitin before their degradation by the proteasome. The proteasome is a large protein complex consisting of a proteolytic core called the 20S particle and ancillary factors that regulate its activity in various ways. The most common form is the 26S proteasome containing one 20S core particle and two 19S regulatory particles that enable the proteasome to degrade ubiquitinated proteins by an ATP-dependent mechanism. Another form is the immunoproteasome containing two 11S regulatory particles, PA28 alpha and PA28 beta, which are induced by interferon gamma under the conditions of intensified immune response. Other regulatory particles include PA28 gamma and PA200. Although PA28 gamma also belongs to a family of activators of the 20S proteasome, it is localized within the nucleus and forms a homoheptamer. PA28 gamma has been implicated in the regulation of cell cycle progression and apoptosis. PA200 has been identified as a large nuclear protein that stimulates proteasomal hydrolysis of peptides.