Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_016G0093400
View in Genome Browser
Position
CM029814.1:6863884-6875599 (+)
11715bp
Gene Type
gene
Gene Description (Protein Product)
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Organism
Salix suchowensis
Also AS AT1G63020

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C4690000900 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
gene-IMY05_C3095003500 rna polymerase
gene-IMY05_C4272001300 RNA polymerases D
Regulatory gene
gene-IMY05_001G0065700 Dof domain, zinc finger
gene-IMY05_001G0068000 Dof domain, zinc finger
gene-IMY05_001G0136200 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000418 RNA polymerase IV complex CC
GO:0000428 DNA-directed RNA polymerase complex CC
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005666 RNA polymerase III complex CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010495 siRNA-mediated long-distance post-transcriptional gene silencing BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010608 post-transcriptional regulation of gene expression BP
GO:0010629 negative regulation of gene expression BP
GO:0014070 response to organic cyclic compound BP
GO:0016070 RNA metabolic process BP
GO:0016246 RNA-mediated post-transcriptional gene silencing BP
GO:0016441 post-transcriptional gene silencing BP
GO:0016458 obsolete gene silencing BP
GO:0019222 regulation of metabolic process BP
GO:0030422 siRNA processing BP
GO:0030880 RNA polymerase complex CC
GO:0031047 RNA-mediated gene silencing BP
GO:0031050 ncRNA processing BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032991 protein-containing complex CC
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0035194 RNA-mediated post-transcriptional gene silencing BP
GO:0040029 epigenetic regulation of gene expression BP
GO:0042221 response to chemical BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043331 response to dsRNA BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0048519 negative regulation of biological process BP
GO:0050789 regulation of biological process BP
GO:0050896 response to stimulus BP
GO:0051716 cellular response to stimulus BP
GO:0055029 nuclear DNA-directed RNA polymerase complex CC
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061695 transferase complex, transferring phosphorus-containing groups CC
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070887 cellular response to chemical stimulus BP
GO:0070918 regulatory ncRNA processing BP
GO:0071310 cellular response to organic substance BP
GO:0071359 cellular response to dsRNA BP
GO:0071407 cellular response to organic cyclic compound BP
GO:0071704 organic substance metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901698 response to nitrogen compound BP
GO:1901699 cellular response to nitrogen compound BP
GO:1902494 catalytic complex CC
GO:1990234 transferase complex CC
KEGG Term Name Description
map03020 RNA polymerase -