Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4401000400
View in Genome Browser
Position
JAEQKX010000643.1:8018-10963 (-)
2945bp
Gene Type
gene
Gene Description (Protein Product)
DKCLD (NUC011) domain
Organism
Salix suchowensis
Also AS AT3G57150

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C4879000600 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
gene-IMY05_C4463001200 Fibrillarin
gene-IMY05_C4478000700 RNA recognition motif

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000154 rRNA modification BP
GO:0000495 box H/ACA RNA 3'-end processing BP
GO:0001522 pseudouridine synthesis BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003729 mRNA binding MF
GO:0003824 catalytic activity MF
GO:0004730 pseudouridylate synthase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005730 nucleolus CC
GO:0005732 sno(s)RNA-containing ribonucleoprotein complex CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006364 rRNA processing BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0006897 endocytosis BP
GO:0007163 establishment or maintenance of cell polarity BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009451 RNA modification BP
GO:0009982 pseudouridine synthase activity MF
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016049 cell growth BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016072 rRNA metabolic process BP
GO:0016073 snRNA metabolic process BP
GO:0016074 sno(s)RNA metabolic process BP
GO:0016192 vesicle-mediated transport BP
GO:0016556 mRNA modification BP
GO:0016829 lyase activity MF
GO:0016835 carbon-oxygen lyase activity MF
GO:0016836 hydro-lyase activity MF
GO:0016853 isomerase activity MF
GO:0016866 intramolecular transferase activity MF
GO:0019843 rRNA binding MF
GO:0019954 asexual reproduction BP
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0030010 establishment of cell polarity BP
GO:0030154 cell differentiation BP
GO:0030436 asexual sporulation BP
GO:0030515 snoRNA binding MF
GO:0030684 preribosome CC
GO:0030686 90S preribosome CC
GO:0031118 rRNA pseudouridine synthesis BP
GO:0031120 snRNA pseudouridine synthesis BP
GO:0031123 RNA 3'-end processing BP
GO:0031126 sno(s)RNA 3'-end processing BP
GO:0031429 box H/ACA snoRNP complex CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032502 developmental process BP
GO:0032991 protein-containing complex CC
GO:0033979 box H/ACA RNA metabolic process BP
GO:0034470 ncRNA processing BP
GO:0034513 box H/ACA snoRNA binding MF
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0034964 box H/ACA RNA processing BP
GO:0040007 growth BP
GO:0040031 snRNA modification BP
GO:0042254 ribosome biogenesis BP
GO:0043144 sno(s)RNA processing BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0043628 regulatory ncRNA 3'-end processing BP
GO:0043934 sporulation BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044452 obsolete nucleolar part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0048315 conidium formation BP
GO:0048468 cell development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0051179 localization BP
GO:0051211 anisotropic cell growth BP
GO:0051234 establishment of localization BP
GO:0061794 conidium development BP
GO:0070013 intracellular organelle lumen CC
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072588 box H/ACA RNP complex CC
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0098657 import into cell BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1902494 catalytic complex CC
GO:1990481 mRNA pseudouridine synthesis BP
GO:1990904 ribonucleoprotein complex CC
KEGG Term Name Description
map03008 Ribosome biogenesis in eukaryotes Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.