Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4488000700
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Position
JAEQKX010000698.1:42492-48791 (-)
6299bp
Gene Type
gene
Gene Description (Protein Product)
Clathrin is the major protein of the polyhedral coat of coated pits and vesicles
Organism
Salix suchowensis
Also AS AT3G08530

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C4613000500 Belongs to the adaptor complexes small subunit family
gene-IMY05_C4522000800 Adaptor protein complex AP-1 gamma subunit
gene-IMY05_C4790000100 ARF-like small GTPases; ARF, ADP-ribosylation factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005198 structural molecule activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005856 cytoskeleton CC
GO:0005938 cell cortex CC
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006892 post-Golgi vesicle-mediated transport BP
GO:0006895 Golgi to endosome transport BP
GO:0006897 endocytosis BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0012506 vesicle membrane CC
GO:0015031 protein transport BP
GO:0015629 actin cytoskeleton CC
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0016192 vesicle-mediated transport BP
GO:0016482 cytosolic transport BP
GO:0030117 membrane coat CC
GO:0030118 clathrin coat CC
GO:0030120 vesicle coat CC
GO:0030125 clathrin vesicle coat CC
GO:0030135 coated vesicle CC
GO:0030136 clathrin-coated vesicle CC
GO:0030479 actin cortical patch CC
GO:0030659 cytoplasmic vesicle membrane CC
GO:0030662 coated vesicle membrane CC
GO:0030665 clathrin-coated vesicle membrane CC
GO:0030863 cortical cytoskeleton CC
GO:0030864 cortical actin cytoskeleton CC
GO:0031090 organelle membrane CC
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0034613 protein localization BP
GO:0042886 amide transport BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044448 obsolete cell cortex part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0046907 intracellular transport BP
GO:0048193 Golgi vesicle transport BP
GO:0048475 coated membrane CC
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0061645 endocytic patch CC
GO:0070727 cellular macromolecule localization BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071944 cell periphery CC
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098657 import into cell BP
GO:0098796 membrane protein complex CC
GO:0098805 membrane CC
GO:0099568 cytoplasmic region CC
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.