Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4536000500
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Position
JAEQKX010000742.1:30524-32349 (-)
1825bp
Gene Type
gene
Gene Description (Protein Product)
"Isocitrate dehydrogenase NAD subunit
Organism
Salix suchowensis
Also AS AT5G03290

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C4616000300 Belongs to the malate synthase family
gene-IMY05_C4821000600 Belongs to the isocitrate lyase PEP mutase superfamily. Isocitrate lyase family
gene-IMY05_C4686000600 Glutamate synthase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004448 isocitrate dehydrogenase [NAD(P)+] activity MF
GO:0004449 isocitrate dehydrogenase (NAD+) activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005759 mitochondrial matrix CC
GO:0005962 mitochondrial isocitrate dehydrogenase complex (NAD+) CC
GO:0006082 organic acid metabolic process BP
GO:0006091 generation of precursor metabolites and energy BP
GO:0006099 tricarboxylic acid cycle BP
GO:0006101 citrate metabolic process BP
GO:0006102 isocitrate metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006536 glutamate metabolic process BP
GO:0006537 glutamate biosynthetic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008652 amino acid biosynthetic process BP
GO:0009058 biosynthetic process BP
GO:0009060 aerobic respiration BP
GO:0009064 glutamine family amino acid metabolic process BP
GO:0009084 glutamine family amino acid biosynthetic process BP
GO:0009987 cellular process BP
GO:0015980 energy derivation by oxidation of organic compounds BP
GO:0016053 organic acid biosynthetic process BP
GO:0016491 oxidoreductase activity MF
GO:0016614 oxidoreductase activity, acting on CH-OH group of donors MF
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor MF
GO:0016999 antibiotic metabolic process BP
GO:0017144 xenobiotic metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0030062 mitochondrial tricarboxylic acid cycle enzyme complex CC
GO:0031974 membrane-enclosed lumen CC
GO:0032991 protein-containing complex CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043436 oxoacid metabolic process BP
GO:0043648 dicarboxylic acid metabolic process BP
GO:0043650 dicarboxylic acid biosynthetic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044429 obsolete mitochondrial part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045239 tricarboxylic acid cycle enzyme complex CC
GO:0045242 isocitrate dehydrogenase complex (NAD+) CC
GO:0045333 cellular respiration BP
GO:0046394 carboxylic acid biosynthetic process BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0070013 intracellular organelle lumen CC
GO:0071704 organic substance metabolic process BP
GO:0072350 tricarboxylic acid metabolic process BP
GO:0098798 mitochondrial protein-containing complex CC
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1901607 alpha-amino acid biosynthetic process BP
GO:1902494 catalytic complex CC
GO:1990204 oxidoreductase complex CC
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00020 Citrate cycle (TCA cycle) The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].