Basic Information
Gene ID
gene-IMY05_C4539000500
Position
JAEQKX010000745.1:21597-24349 (+)
2752bp
Gene Type
gene
Gene Description (Protein Product)
Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Organism
Also AS AT1G66810

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C4882000100 Exosome complex exonuclease RRP4 N-terminal region
gene-IMY05_C5252001400 Belongs to the DEAD box helicase family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
GO Term Description GO Category
GO:0000956 nuclear-transcribed mRNA catabolic process BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003723 RNA binding MF
GO:0003729 mRNA binding MF
GO:0003730 mRNA 3'-UTR binding MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006401 RNA catabolic process BP
GO:0006402 mRNA catabolic process BP
GO:0006417 regulation of translation BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009896 positive regulation of catabolic process BP
GO:0009987 cellular process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010608 post-transcriptional regulation of gene expression BP
GO:0010629 negative regulation of gene expression BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0017091 mRNA 3'-UTR AU-rich region binding MF
GO:0017148 negative regulation of translation BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019439 aromatic compound catabolic process BP
GO:0031136 obsolete positive regulation of conjugation BP
GO:0031137 regulation of conjugation with cellular fusion BP
GO:0031139 positive regulation of conjugation with cellular fusion BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031331 positive regulation of cellular catabolic process BP
GO:0032268 regulation of protein metabolic process BP
GO:0032269 negative regulation of protein metabolic process BP
GO:0034248 regulation of amide metabolic process BP
GO:0034249 negative regulation of amide metabolic process BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034655 nucleobase-containing compound catabolic process BP
GO:0035925 mRNA 3'-UTR AU-rich region binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043487 regulation of RNA stability BP
GO:0043488 regulation of mRNA stability BP
GO:0043900 obsolete regulation of multi-organism process BP
GO:0043902 obsolete positive regulation of multi-organism process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044270 cellular nitrogen compound catabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044464 obsolete cell part CC
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046700 heterocycle catabolic process BP
GO:0046999 obsolete regulation of conjugation BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0050779 RNA destabilization BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051248 negative regulation of protein metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061013 regulation of mRNA catabolic process BP
GO:0061014 positive regulation of mRNA catabolic process BP
GO:0061157 mRNA destabilization BP
GO:0061158 3'-UTR-mediated mRNA destabilization BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0071704 organic substance metabolic process BP
GO:0080090 regulation of primary metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901361 organic cyclic compound catabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901575 organic substance catabolic process BP
GO:1903311 regulation of mRNA metabolic process BP
GO:1903313 positive regulation of mRNA metabolic process BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2000241 regulation of reproductive process BP
GO:2000243 positive regulation of reproductive process BP