PPGR - Gene Detail

Basic Information

Gene ID	gene-IMY05_C4558000400 View in Genome Browser
Position	JAEQKX010000760.1:17807-19958 (-) 2151bp
Gene Type	gene
Gene Description (Protein Product)	Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)
Organism	Salix suchowensis
Also AS	AT1G48900

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-IMY05_C4631000500 Belongs to the universal ribosomal protein uL23 family

gene-IMY05_C4613000100 60S ribosomal protein L4 C-terminal domain

gene-IMY05_C4697000200 Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003824	catalytic activity	MF
GO:0003924	GTPase activity	MF
GO:0005048	signal sequence binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005786	signal recognition particle, endoplasmic reticulum targeting	CC
GO:0006605	protein targeting	BP
GO:0006612	protein targeting to membrane	BP
GO:0006613	cotranslational protein targeting to membrane	BP
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	BP
GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008312	7S RNA binding	MF
GO:0012505	endomembrane system	CC
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0030942	endoplasmic reticulum signal peptide binding	MF
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033218	amide binding	MF
GO:0033365	protein localization to organelle	BP
GO:0034613	protein localization	BP
GO:0042277	peptide binding	MF
GO:0042886	amide transport	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0045047	protein targeting to ER	BP
GO:0045184	establishment of protein localization	BP
GO:0046907	intracellular transport	BP
GO:0048500	signal recognition particle	CC
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0055085	transmembrane transport	BP
GO:0065002	intracellular protein transmembrane transport	BP
GO:0070727	cellular macromolecule localization	BP
GO:0070972	protein localization to endoplasmic reticulum	BP
GO:0071702	organic substance transport	BP
GO:0071705	nitrogen compound transport	BP
GO:0071806	protein transmembrane transport	BP
GO:0072594	establishment of protein localization to organelle	BP
GO:0072599	establishment of protein localization to endoplasmic reticulum	BP
GO:0072657	protein localization to membrane	BP
GO:0090150	establishment of protein localization to membrane	BP
GO:0097159	organic cyclic compound binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map03060	Protein export	The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.