Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4561000200
View in Genome Browser
Position
JAEQKX010000763.1:13023-15796 (-)
2773bp
Gene Type
gene
Gene Description (Protein Product)
Cobalamin-independent methionine synthase
Organism
Salix suchowensis
Also AS AT5G17920

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C5089001200 Homocysteine s-methyltransferase
gene-IMY05_C5091001900 Belongs to the cysteine synthase cystathionine beta- synthase family
gene-IMY05_C4723000900 DegT/DnrJ/EryC1/StrS aminotransferase family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000096 sulfur amino acid metabolic process BP
GO:0000097 sulfur amino acid biosynthetic process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005576 extracellular region CC
GO:0005618 cell wall CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0006082 organic acid metabolic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006144 purine nucleobase metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006534 cysteine metabolic process BP
GO:0006555 methionine metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006790 sulfur compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008168 methyltransferase activity MF
GO:0008172 S-methyltransferase activity MF
GO:0008270 zinc ion binding MF
GO:0008652 amino acid biosynthetic process BP
GO:0008705 methionine synthase activity MF
GO:0009058 biosynthetic process BP
GO:0009066 aspartate family amino acid metabolic process BP
GO:0009067 aspartate family amino acid biosynthetic process BP
GO:0009069 serine family amino acid metabolic process BP
GO:0009086 methionine biosynthetic process BP
GO:0009092 homoserine metabolic process BP
GO:0009112 nucleobase metabolic process BP
GO:0009113 purine nucleobase biosynthetic process BP
GO:0009266 response to temperature stimulus BP
GO:0009277 fungal-type cell wall CC
GO:0009408 response to heat BP
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009628 response to abiotic stimulus BP
GO:0009986 cell surface CC
GO:0009987 cellular process BP
GO:0016020 membrane CC
GO:0016053 organic acid biosynthetic process BP
GO:0016740 transferase activity MF
GO:0016741 transferase activity, transferring one-carbon groups MF
GO:0017144 xenobiotic metabolic process BP
GO:0018130 heterocycle biosynthetic process BP
GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine BP
GO:0019280 L-methionine biosynthetic process from homoserine via O-acetyl-L-homoserine and cystathionine BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0030312 external encapsulating structure CC
GO:0030446 hyphal cell wall CC
GO:0031012 extracellular matrix CC
GO:0031347 regulation of defense response BP
GO:0031349 positive regulation of defense response BP
GO:0032259 methylation BP
GO:0033554 cellular response to stress BP
GO:0034605 cellular response to heat BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0035821 modulation of process of another organism BP
GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity MF
GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity MF
GO:0042440 pigment metabolic process BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044003 modulation by symbiont of host process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044272 sulfur compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044403 biological process involved in symbiotic interaction BP
GO:0044416 induction by symbiont of host defense response BP
GO:0044419 biological process involved in interspecies interaction between organisms BP
GO:0044421 obsolete extracellular region part CC
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046083 adenine metabolic process BP
GO:0046084 adenine biosynthetic process BP
GO:0046112 nucleobase biosynthetic process BP
GO:0046148 pigment biosynthetic process BP
GO:0046394 carboxylic acid biosynthetic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0048518 positive regulation of biological process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0050667 homocysteine metabolic process BP
GO:0050789 regulation of biological process BP
GO:0050896 response to stimulus BP
GO:0051701 biological process involved in interaction with host BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0051716 cellular response to stimulus BP
GO:0051817 obsolete modulation of process of other organism involved in symbiotic interaction BP
GO:0052031 modulation by symbiont of host defense response BP
GO:0052173 response to defenses of other organism BP
GO:0052200 response to host defenses BP
GO:0052251 induction by symbiont of host defense response BP
GO:0052255 modulation by symbiont of host defense response BP
GO:0052509 induction by symbiont of host defense response BP
GO:0052510 induction by symbiont of host defense response BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0062039 biofilm matrix CC
GO:0062040 fungal biofilm matrix CC
GO:0065007 biological regulation BP
GO:0071265 L-methionine biosynthetic process BP
GO:0071266 'de novo' L-methionine biosynthetic process BP
GO:0071704 organic substance metabolic process BP
GO:0071944 cell periphery CC
GO:0072521 purine-containing compound metabolic process BP
GO:0072522 purine-containing compound biosynthetic process BP
GO:0075136 response to host BP
GO:0080134 regulation of response to stress BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1901607 alpha-amino acid biosynthetic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00450 Selenocompound metabolism -
map00270 Cysteine and methionine metabolism Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].