Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4586000400
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Position
JAEQKX010000786.1:10279-12004 (-)
1725bp
Gene Type
gene
Gene Description (Protein Product)
Beta-eliminating lyase
Organism
Salix suchowensis
Also AS AT5G65720

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C5091002100 Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
gene-IMY05_C5091001900 Belongs to the cysteine synthase cystathionine beta- synthase family
gene-IMY05_C4805000200 Aminotransferase class I and II

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000959 mitochondrial RNA metabolic process BP
GO:0000963 mitochondrial RNA processing BP
GO:0002097 tRNA wobble base modification BP
GO:0002098 tRNA wobble uridine modification BP
GO:0002143 tRNA wobble position uridine thiolation BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004123 cystathionine gamma-lyase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005759 mitochondrial matrix CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006396 RNA processing BP
GO:0006399 tRNA metabolic process BP
GO:0006400 tRNA modification BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006790 sulfur compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006873 intracellular monoatomic ion homeostasis BP
GO:0006875 obsolete intracellular metal ion homeostasis BP
GO:0006879 intracellular iron ion homeostasis BP
GO:0008033 tRNA processing BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009451 RNA modification BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016226 iron-sulfur cluster assembly BP
GO:0016740 transferase activity MF
GO:0016782 transferase activity, transferring sulphur-containing groups MF
GO:0016783 sulfurtransferase activity MF
GO:0016829 lyase activity MF
GO:0016846 carbon-sulfur lyase activity MF
GO:0019725 cellular homeostasis BP
GO:0022607 cellular component assembly BP
GO:0030003 intracellular monoatomic cation homeostasis BP
GO:0031071 cysteine desulfurase activity MF
GO:0031163 metallo-sulfur cluster assembly BP
GO:0031974 membrane-enclosed lumen CC
GO:0032991 protein-containing complex CC
GO:0034227 tRNA thio-modification BP
GO:0034470 ncRNA processing BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034660 ncRNA metabolic process BP
GO:0042592 homeostatic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044429 obsolete mitochondrial part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044445 obsolete cytosolic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044571 [2Fe-2S] cluster assembly BP
GO:0046483 heterocycle metabolic process BP
GO:0046916 obsolete intracellular transition metal ion homeostasis BP
GO:0048878 chemical homeostasis BP
GO:0050801 monoatomic ion homeostasis BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0055065 obsolete metal ion homeostasis BP
GO:0055072 iron ion homeostasis BP
GO:0055076 obsolete transition metal ion homeostasis BP
GO:0055080 monoatomic cation homeostasis BP
GO:0055082 intracellular chemical homeostasis BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070013 intracellular organelle lumen CC
GO:0070525 tRNA threonylcarbamoyladenosine metabolic process BP
GO:0070900 mitochondrial tRNA modification BP
GO:0070903 mitochondrial tRNA thio-modification BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0090646 mitochondrial tRNA processing BP
GO:0098771 inorganic ion homeostasis BP
GO:0140053 mitochondrial gene expression BP
GO:1900864 mitochondrial RNA modification BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1990221 L-cysteine desulfurase complex CC
KEGG Term Name Description
map04122 Sulfur relay system Ubiquitin and ubiquitin-like proteins (Ubls) are signalling messengers that control many cellular functions, such as cell proliferation, apoptosis, and DNA repair. It is suggested that Ub-protein modification evolved from prokaryotic sulfurtransfer systems. Molybdenum cofactor (Moco) and thiamin are sulfur-containing cofactors whose biosynthesis includes a key sulfur transfer step that uses unique sulfur carrier proteins, MoaD and ThiS. Ubiquitin, MoaD, and ThiS are all structurally related proteins whose C-termini are activated through adenylation by homologous E1-like enzymes. s2T biosynthesis may share similar chemistry with Moco and thiamin synthesis. In Saccharomyces cerevisiae, Urm1 and Uba4 function as part of a ubl protein conjugation system, though they have sequence homology to bacterial sulfur-transfer enzymes and the ability to function in sulfur transfer.
map01100 Metabolic pathways -
map00730 Thiamine metabolism -