Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4610000100
View in Genome Browser
Position
JAEQKX010000805.1:6140-10307 (+)
4167bp
Gene Type
gene
Gene Description (Protein Product)
Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q)
Organism
Salix suchowensis
Also AS AT5G66760

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C4821000600 Belongs to the isocitrate lyase PEP mutase superfamily. Isocitrate lyase family
gene-IMY05_C4616000300 Belongs to the malate synthase family
gene-IMY05_C5088000200 ATP sulfurylase 1

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000104 succinate dehydrogenase activity MF
GO:0000166 nucleotide binding MF
GO:0001539 cilium or flagellum-dependent cell motility BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0005740 mitochondrial envelope CC
GO:0005743 mitochondrial inner membrane CC
GO:0005746 mitochondrial respirasome CC
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0006082 organic acid metabolic process BP
GO:0006091 generation of precursor metabolites and energy BP
GO:0006099 tricarboxylic acid cycle BP
GO:0006101 citrate metabolic process BP
GO:0006105 succinate metabolic process BP
GO:0006113 fermentation BP
GO:0006119 oxidative phosphorylation BP
GO:0006121 mitochondrial electron transport, succinate to ubiquinone BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006163 purine nucleotide metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006753 nucleoside phosphate metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006928 obsolete movement of cell or subcellular component BP
GO:0006950 response to stress BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0006996 organelle organization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008177 succinate dehydrogenase (ubiquinone) activity MF
GO:0009055 electron transfer activity MF
GO:0009060 aerobic respiration BP
GO:0009061 anaerobic respiration BP
GO:0009117 nucleotide metabolic process BP
GO:0009123 nucleoside monophosphate metabolic process BP
GO:0009126 purine nucleoside monophosphate metabolic process BP
GO:0009141 nucleoside triphosphate metabolic process BP
GO:0009144 purine nucleoside triphosphate metabolic process BP
GO:0009150 purine ribonucleotide metabolic process BP
GO:0009161 ribonucleoside monophosphate metabolic process BP
GO:0009167 purine ribonucleoside monophosphate metabolic process BP
GO:0009199 ribonucleoside triphosphate metabolic process BP
GO:0009205 purine ribonucleoside triphosphate metabolic process BP
GO:0009259 ribonucleotide metabolic process BP
GO:0009987 cellular process BP
GO:0015980 energy derivation by oxidation of organic compounds BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016310 phosphorylation BP
GO:0016491 oxidoreductase activity MF
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors MF
GO:0016635 oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor MF
GO:0016999 antibiotic metabolic process BP
GO:0017144 xenobiotic metabolic process BP
GO:0019637 organophosphate metabolic process BP
GO:0019693 ribose phosphate metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0019866 organelle inner membrane CC
GO:0022607 cellular component assembly BP
GO:0022900 electron transport chain BP
GO:0022904 respiratory electron transport chain BP
GO:0030030 cell projection organization BP
GO:0030031 cell projection assembly BP
GO:0031090 organelle membrane CC
GO:0031966 mitochondrial membrane CC
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0032991 protein-containing complex CC
GO:0033554 cellular response to stress BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0036094 small molecule binding MF
GO:0040011 locomotion BP
GO:0042773 ATP synthesis coupled electron transport BP
GO:0042775 mitochondrial ATP synthesis coupled electron transport BP
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0043648 dicarboxylic acid metabolic process BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044429 obsolete mitochondrial part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044455 obsolete mitochondrial membrane part CC
GO:0044459 obsolete plasma membrane part CC
GO:0044464 obsolete cell part CC
GO:0044780 bacterial-type flagellum assembly BP
GO:0044781 bacterial-type flagellum organization BP
GO:0045257 succinate dehydrogenase complex (ubiquinone) CC
GO:0045273 respiratory chain complex II CC
GO:0045274 plasma membrane respiratory chain complex II CC
GO:0045281 succinate dehydrogenase complex CC
GO:0045283 fumarate reductase complex CC
GO:0045284 plasma membrane fumarate reductase complex CC
GO:0045333 cellular respiration BP
GO:0046034 ATP metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0048037 obsolete cofactor binding MF
GO:0048870 cell motility BP
GO:0050660 flavin adenine dinucleotide binding MF
GO:0050662 obsolete coenzyme binding MF
GO:0050896 response to stimulus BP
GO:0051179 localization BP
GO:0051674 localization of cell BP
GO:0051716 cellular response to stimulus BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0070469 respirasome CC
GO:0070470 plasma membrane respirasome CC
GO:0070925 organelle assembly BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0071949 FAD binding MF
GO:0071973 bacterial-type flagellum-dependent cell motility BP
GO:0072350 tricarboxylic acid metabolic process BP
GO:0072521 purine-containing compound metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0097588 archaeal or bacterial-type flagellum-dependent cell motility BP
GO:0098796 membrane protein complex CC
GO:0098797 plasma membrane protein complex CC
GO:0098798 mitochondrial protein-containing complex CC
GO:0098800 inner mitochondrial membrane protein complex CC
GO:0098803 respiratory chain complex CC
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901265 nucleoside phosphate binding MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1902494 catalytic complex CC
GO:1990204 oxidoreductase complex CC
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00190 Oxidative phosphorylation -
map00020 Citrate cycle (TCA cycle) The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].