Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4661000300
View in Genome Browser
Position
JAEQKX010000854.1:34136-36726 (+)
2590bp
Gene Type
gene
Gene Description (Protein Product)
to Structure Of The Set Domain Histone Lysine Methyltransferase Clr4
Organism
Salix suchowensis
Also AS AT2G23740

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C4799000100 Histone H3
gene-IMY05_C4835000100 Belongs to the MYST (SAS MOZ) family
gene-IMY05_C5252000500 malic enzyme

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000122 negative regulation of transcription by RNA polymerase II BP
GO:0000151 ubiquitin ligase complex CC
GO:0000152 nuclear ubiquitin ligase complex CC
GO:0000183 rDNA heterochromatin formation BP
GO:0000228 nuclear chromosome CC
GO:0000280 nuclear division BP
GO:0000775 chromosome, centromeric region CC
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0000792 heterochromatin CC
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003697 single-stranded DNA binding MF
GO:0003723 RNA binding MF
GO:0003727 single-stranded RNA binding MF
GO:0003824 catalytic activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005694 chromosome CC
GO:0005720 heterochromatin CC
GO:0005721 pericentric heterochromatin CC
GO:0006325 chromatin organization BP
GO:0006338 chromatin remodeling BP
GO:0006342 heterochromatin formation BP
GO:0006348 subtelomeric heterochromatin formation BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006464 protein modification process BP
GO:0006479 protein methylation BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0007049 cell cycle BP
GO:0007059 chromosome segregation BP
GO:0007127 meiosis I BP
GO:0007530 sex determination BP
GO:0007531 mating type determination BP
GO:0007533 mating type switching BP
GO:0007535 donor selection BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008168 methyltransferase activity MF
GO:0008170 N-methyltransferase activity MF
GO:0008213 protein alkylation BP
GO:0008276 protein methyltransferase activity MF
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity MF
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010629 negative regulation of gene expression BP
GO:0016043 cellular component organization BP
GO:0016278 lysine N-methyltransferase activity MF
GO:0016279 protein-lysine N-methyltransferase activity MF
GO:0016458 obsolete gene silencing BP
GO:0016569 obsolete covalent chromatin modification BP
GO:0016570 histone modification BP
GO:0016571 histone methylation BP
GO:0016740 transferase activity MF
GO:0016741 transferase activity, transferring one-carbon groups MF
GO:0018022 peptidyl-lysine methylation BP
GO:0018024 histone lysine N-methyltransferase activity MF
GO:0018193 peptidyl-amino acid modification BP
GO:0018205 peptidyl-lysine modification BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0022402 cell cycle process BP
GO:0022413 reproductive process in single-celled organism BP
GO:0022414 reproductive process BP
GO:0030154 cell differentiation BP
GO:0030466 silent mating-type cassette heterochromatin formation BP
GO:0030702 pericentric heterochromatin formation BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031461 cullin-RING ubiquitin ligase complex CC
GO:0031465 Cul4B-RING E3 ubiquitin ligase complex CC
GO:0031618 pericentric heterochromatin CC
GO:0031934 mating-type region heterochromatin CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032259 methylation BP
GO:0032502 developmental process BP
GO:0032505 reproduction of a single-celled organism BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0034397 telomere localization BP
GO:0034401 obsolete chromatin organization involved in regulation of transcription BP
GO:0034613 protein localization BP
GO:0034708 methyltransferase complex CC
GO:0034968 histone lysine methylation BP
GO:0035064 methylated histone binding MF
GO:0035097 histone methyltransferase complex CC
GO:0036211 protein modification process BP
GO:0040029 epigenetic regulation of gene expression BP
GO:0042054 histone methyltransferase activity MF
GO:0042393 histone binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043412 macromolecule modification BP
GO:0043414 macromolecule methylation BP
GO:0043494 CLRC complex CC
GO:0043954 cellular component maintenance BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0045132 meiotic chromosome segregation BP
GO:0045141 meiotic telomere clustering BP
GO:0045143 homologous chromosome segregation BP
GO:0045165 cell fate commitment BP
GO:0045814 negative regulation of gene expression, epigenetic BP
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0046974 histone H3K9 methyltransferase activity MF
GO:0048285 organelle fission BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0048869 cellular developmental process BP
GO:0050000 chromosome localization BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051276 chromosome organization BP
GO:0051303 establishment of chromosome localization BP
GO:0051321 meiotic cell cycle BP
GO:0051567 histone H3-K9 methylation BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0051656 establishment of organelle localization BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061647 histone H3-K9 modification BP
GO:0061982 meiosis I cell cycle process BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070192 chromosome organization involved in meiotic cell cycle BP
GO:0070727 cellular macromolecule localization BP
GO:0070827 obsolete chromatin maintenance BP
GO:0070828 heterochromatin organization BP
GO:0070829 obsolete heterochromatin maintenance BP
GO:0070868 obsolete heterochromatin organization involved in chromatin silencing BP
GO:0070870 obsolete heterochromatin maintenance BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0080008 Cul4-RING E3 ubiquitin ligase complex CC
GO:0080090 regulation of primary metabolic process BP
GO:0090220 chromosome localization to nuclear envelope involved in homologous chromosome segregation BP
GO:0097159 organic cyclic compound binding MF
GO:0097549 obsolete chromatin organization involved in negative regulation of transcription BP
GO:0098687 chromosomal region CC
GO:0098813 nuclear chromosome segregation BP
GO:0140013 meiotic nuclear division BP
GO:0140030 modification-dependent protein binding MF
GO:0140034 methylation-dependent protein binding MF
GO:0140096 catalytic activity, acting on a protein MF
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1902368 obsolete pericentric heterochromatin maintenance BP
GO:1902494 catalytic complex CC
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1903046 meiotic cell cycle process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1990141 pericentric heterochromatin formation BP
GO:1990234 transferase complex CC
GO:1990421 chromosome, subtelomeric region CC
GO:1990707 chromosome, subtelomeric region CC
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP
KEGG Term Name Description
map01100 Metabolic pathways -
map00310 Lysine degradation -