Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4669000200
View in Genome Browser
Position
JAEQKX010000862.1:10774-12272 (-)
1498bp
Gene Type
gene
Gene Description (Protein Product)
"WD domain
Organism
Salix suchowensis
Also AS AT1G80670

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C5045000300 RAN GTPase-activating protein
gene-IMY05_C5235000400 THO complex subunit
gene-IMY05_C4879000700 Belongs to the ubiquitin-conjugating enzyme family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000054 ribosomal subunit export from nucleus BP
GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery BP
GO:0000973 post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005635 nuclear envelope CC
GO:0005643 nuclear pore CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006403 RNA localization BP
GO:0006405 RNA export from nucleus BP
GO:0006406 mRNA export from nucleus BP
GO:0006606 protein import into nucleus BP
GO:0006611 protein export from nucleus BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006913 nucleocytoplasmic transport BP
GO:0006996 organelle organization BP
GO:0006997 nucleus organization BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010793 regulation of mRNA export from nucleus BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0015931 nucleobase-containing compound transport BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016043 cellular component organization BP
GO:0016973 poly(A)+ mRNA export from nucleus BP
GO:0017038 protein import BP
GO:0019222 regulation of metabolic process BP
GO:0022613 ribonucleoprotein complex biogenesis BP
GO:0031081 nuclear pore localization BP
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031503 protein-containing complex localization BP
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0032182 ubiquitin-like protein binding MF
GO:0032239 regulation of nucleobase-containing compound transport BP
GO:0032386 regulation of intracellular transport BP
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0033157 regulation of intracellular protein transport BP
GO:0033365 protein localization to organelle BP
GO:0033750 ribosome localization BP
GO:0034504 protein localization to nucleus BP
GO:0034613 protein localization BP
GO:0034629 protein-containing complex localization BP
GO:0042254 ribosome biogenesis BP
GO:0042886 amide transport BP
GO:0043130 ubiquitin binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044085 cellular component biogenesis BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0046822 regulation of nucleocytoplasmic transport BP
GO:0046825 regulation of protein export from nucleus BP
GO:0046831 regulation of RNA export from nucleus BP
GO:0046907 intracellular transport BP
GO:0048583 regulation of response to stimulus BP
GO:0050657 nucleic acid transport BP
GO:0050658 RNA transport BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051028 mRNA transport BP
GO:0051049 regulation of transport BP
GO:0051168 nuclear export BP
GO:0051169 nuclear transport BP
GO:0051170 import into nucleus BP
GO:0051179 localization BP
GO:0051223 regulation of protein transport BP
GO:0051234 establishment of localization BP
GO:0051236 establishment of RNA localization BP
GO:0051276 chromosome organization BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0051656 establishment of organelle localization BP
GO:0051664 nuclear pore localization BP
GO:0051668 localization within membrane BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060341 regulation of cellular localization BP
GO:0065007 biological regulation BP
GO:0070201 regulation of establishment of protein localization BP
GO:0070727 cellular macromolecule localization BP
GO:0071166 ribonucleoprotein complex localization BP
GO:0071426 obsolete ribonucleoprotein complex export from nucleus BP
GO:0071427 obsolete mRNA-containing ribonucleoprotein complex export from nucleus BP
GO:0071428 obsolete rRNA-containing ribonucleoprotein complex export from nucleus BP
GO:0071702 organic substance transport BP
GO:0071704 organic substance metabolic process BP
GO:0071705 nitrogen compound transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072594 establishment of protein localization to organelle BP
GO:0080134 regulation of response to stress BP
GO:0080135 regulation of cellular response to stress BP
GO:0090087 regulation of peptide transport BP
GO:0097159 organic cyclic compound binding MF
GO:1900034 regulation of cellular response to heat BP
GO:1901363 heterocyclic compound binding MF
GO:1903827 regulation of protein localization BP
GO:2000197 regulation of ribonucleoprotein complex localization BP
GO:2000728 regulation of mRNA export from nucleus in response to heat stress BP
KEGG Term Name Description
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.