PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	gene-IMY05_C4736000100 View in Genome Browser
Position	JAEQKX010000923.1:2516-4520 (-) 2004bp
Gene Type	gene
Gene Description (Protein Product)	phosphatase 2A regulatory
Organism	Salix suchowensis
Also AS	AT1G17720

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-IMY05_C4876000400 P-loop containing nucleoside triphosphate hydrolase protein

gene-IMY05_C5047000400 The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

gene-IMY05_C5047000200 The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000075	cell cycle checkpoint signaling	BP
GO:0000159	protein phosphatase type 2A complex	CC
GO:0000278	mitotic cell cycle	BP
GO:0000280	nuclear division	BP
GO:0000322	storage vacuole	CC
GO:0000323	lytic vacuole	CC
GO:0000324	fungal-type vacuole	CC
GO:0000329	fungal-type vacuole membrane	CC
GO:0000910	cytokinesis	BP
GO:0001100	negative regulation of exit from mitosis	BP
GO:0003674	molecular_function	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0005819	spindle	CC
GO:0005829	cytosol	CC
GO:0005856	cytoskeleton	CC
GO:0005933	cellular bud	CC
GO:0005934	cellular bud tip	CC
GO:0005935	cellular bud neck	CC
GO:0005937	mating projection	CC
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006464	protein modification process	BP
GO:0006470	protein dephosphorylation	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007049	cell cycle	BP
GO:0007059	chromosome segregation	BP
GO:0007088	regulation of mitotic nuclear division	BP
GO:0007093	mitotic cell cycle checkpoint signaling	BP
GO:0007096	regulation of exit from mitosis	BP
GO:0007127	meiosis I	BP
GO:0007346	regulation of mitotic cell cycle	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008287	protein serine/threonine phosphatase complex	CC
GO:0009889	regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009966	regulation of signal transduction	BP
GO:0009968	negative regulation of signal transduction	BP
GO:0009987	cellular process	BP
GO:0010389	regulation of G2/M transition of mitotic cell cycle	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0010557	positive regulation of macromolecule biosynthetic process	BP
GO:0010562	positive regulation of phosphorus metabolic process	BP
GO:0010564	regulation of cell cycle process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010628	positive regulation of gene expression	BP
GO:0010639	negative regulation of organelle organization	BP
GO:0010646	regulation of cell communication	BP
GO:0010648	negative regulation of cell communication	BP
GO:0010921	regulation of phosphatase activity	BP
GO:0010948	negative regulation of cell cycle process	BP
GO:0010965	regulation of mitotic sister chromatid separation	BP
GO:0010971	positive regulation of G2/M transition of mitotic cell cycle	BP
GO:0010972	negative regulation of G2/M transition of mitotic cell cycle	BP
GO:0010974	negative regulation of division septum assembly	BP
GO:0015630	microtubule cytoskeleton	CC
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016311	dephosphorylation	BP
GO:0019208	phosphatase regulator activity	MF
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019220	regulation of phosphate metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019888	protein phosphatase regulator activity	MF
GO:0022402	cell cycle process	BP
GO:0022414	reproductive process	BP
GO:0023051	regulation of signaling	BP
GO:0023057	negative regulation of signaling	BP
GO:0030071	regulation of mitotic metaphase/anaphase transition	BP
GO:0030234	enzyme regulator activity	MF
GO:0030427	site of polarized growth	CC
GO:0031029	regulation of septation initiation signaling	BP
GO:0031030	negative regulation of septation initiation signaling	BP
GO:0031090	organelle membrane	CC
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031328	positive regulation of cellular biosynthetic process	BP
GO:0031399	regulation of protein modification process	BP
GO:0031401	positive regulation of protein modification process	BP
GO:0031991	regulation of actomyosin contractile ring contraction	BP
GO:0032268	regulation of protein metabolic process	BP
GO:0032270	positive regulation of protein metabolic process	BP
GO:0032465	regulation of cytokinesis	BP
GO:0032466	negative regulation of cytokinesis	BP
GO:0032502	developmental process	BP
GO:0032506	cytokinetic process	BP
GO:0032879	regulation of localization	BP
GO:0032880	regulation of protein localization	BP
GO:0032954	regulation of cytokinetic process	BP
GO:0032955	regulation of division septum assembly	BP
GO:0032956	regulation of actin cytoskeleton organization	BP
GO:0032970	regulation of actin filament-based process	BP
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033043	regulation of organelle organization	BP
GO:0033044	regulation of chromosome organization	BP
GO:0033045	regulation of sister chromatid segregation	BP
GO:0033047	regulation of mitotic sister chromatid segregation	BP
GO:0034260	negative regulation of GTPase activity	BP
GO:0034613	protein localization	BP
GO:0035303	regulation of dephosphorylation	BP
GO:0035304	regulation of protein dephosphorylation	BP
GO:0035306	positive regulation of dephosphorylation	BP
GO:0035307	positive regulation of protein dephosphorylation	BP
GO:0036211	protein modification process	BP
GO:0042995	cell projection	CC
GO:0043086	negative regulation of catalytic activity	BP
GO:0043087	regulation of GTPase activity	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043332	mating projection tip	CC
GO:0043412	macromolecule modification	BP
GO:0043666	regulation of phosphoprotein phosphatase activity	BP
GO:0044087	regulation of cellular component biogenesis	BP
GO:0044092	negative regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044463	obsolete cell projection part	CC
GO:0044464	obsolete cell part	CC
GO:0044818	mitotic G2/M transition checkpoint	BP
GO:0045132	meiotic chromosome segregation	BP
GO:0045143	homologous chromosome segregation	BP
GO:0045786	negative regulation of cell cycle	BP
GO:0045787	positive regulation of cell cycle	BP
GO:0045839	negative regulation of mitotic nuclear division	BP
GO:0045893	positive regulation of DNA-templated transcription	BP
GO:0045930	negative regulation of mitotic cell cycle	BP
GO:0045931	positive regulation of mitotic cell cycle	BP
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0045937	positive regulation of phosphate metabolic process	BP
GO:0046578	regulation of Ras protein signal transduction	BP
GO:0046580	negative regulation of Ras protein signal transduction	BP
GO:0048285	organelle fission	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048585	negative regulation of response to stimulus	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050794	regulation of cellular process	BP
GO:0051056	regulation of small GTPase mediated signal transduction	BP
GO:0051058	negative regulation of small GTPase mediated signal transduction	BP
GO:0051128	regulation of cellular component organization	BP
GO:0051129	negative regulation of cellular component organization	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051174	regulation of phosphorus metabolic process	BP
GO:0051179	localization	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051247	positive regulation of protein metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051254	positive regulation of RNA metabolic process	BP
GO:0051286	cell tip	CC
GO:0051301	cell division	BP
GO:0051302	regulation of cell division	BP
GO:0051321	meiotic cell cycle	BP
GO:0051336	regulation of hydrolase activity	BP
GO:0051346	negative regulation of hydrolase activity	BP
GO:0051493	regulation of cytoskeleton organization	BP
GO:0051641	cellular localization	BP
GO:0051726	regulation of cell cycle	BP
GO:0051782	negative regulation of cell division	BP
GO:0051783	regulation of nuclear division	BP
GO:0051784	negative regulation of nuclear division	BP
GO:0051983	regulation of chromosome segregation	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060341	regulation of cellular localization	BP
GO:0061586	positive regulation of transcription by transcription factor localization	BP
GO:0061982	meiosis I cell cycle process	BP
GO:0065007	biological regulation	BP
GO:0065009	regulation of molecular function	BP
GO:0070262	peptidyl-serine dephosphorylation	BP
GO:0070727	cellular macromolecule localization	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0072686	mitotic spindle	CC
GO:0080090	regulation of primary metabolic process	BP
GO:0090068	positive regulation of cell cycle process	BP
GO:0090231	regulation of spindle checkpoint	BP
GO:0090266	regulation of mitotic cell cycle spindle assembly checkpoint	BP
GO:0098588	bounding membrane of organelle	CC
GO:0098772	molecular function regulator activity	MF
GO:0098805	membrane	CC
GO:0098813	nuclear chromosome segregation	BP
GO:0098852	lytic vacuole membrane	CC
GO:0110020	regulation of actomyosin structure organization	BP
GO:0120025	plasma membrane bounded cell projection	CC
GO:0120038	obsolete plasma membrane bounded cell projection part	CC
GO:0140013	meiotic nuclear division	BP
GO:1900180	regulation of protein localization to nucleus	BP
GO:1900182	positive regulation of protein localization to nucleus	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901891	regulation of cell septum assembly	BP
GO:1901892	negative regulation of cell septum assembly	BP
GO:1901976	regulation of cell cycle checkpoint	BP
GO:1901987	regulation of cell cycle phase transition	BP
GO:1901988	negative regulation of cell cycle phase transition	BP
GO:1901989	positive regulation of cell cycle phase transition	BP
GO:1901990	regulation of mitotic cell cycle phase transition	BP
GO:1901991	negative regulation of mitotic cell cycle phase transition	BP
GO:1901992	positive regulation of mitotic cell cycle phase transition	BP
GO:1902099	regulation of metaphase/anaphase transition of cell cycle	BP
GO:1902412	regulation of mitotic cytokinesis	BP
GO:1902413	negative regulation of mitotic cytokinesis	BP
GO:1902494	catalytic complex	CC
GO:1902531	regulation of intracellular signal transduction	BP
GO:1902532	negative regulation of intracellular signal transduction	BP
GO:1902680	positive regulation of RNA biosynthetic process	BP
GO:1902749	regulation of cell cycle G2/M phase transition	BP
GO:1902750	negative regulation of cell cycle G2/M phase transition	BP
GO:1902751	positive regulation of cell cycle G2/M phase transition	BP
GO:1903046	meiotic cell cycle process	BP
GO:1903047	mitotic cell cycle process	BP
GO:1903293	phosphatase complex	CC
GO:1903436	regulation of mitotic cytokinetic process	BP
GO:1903437	negative regulation of mitotic cytokinetic process	BP
GO:1903504	regulation of mitotic spindle checkpoint	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1903508	positive regulation of nucleic acid-templated transcription	BP
GO:1903827	regulation of protein localization	BP
GO:1903829	positive regulation of protein localization	BP
GO:1905818	regulation of chromosome separation	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map03015	mRNA surveillance pathway	The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.