PPGR - Gene Detail

Basic Information

Gene ID	gene-IMY05_C4791000100 View in Genome Browser
Position	JAEQKX010000976.1:3048-4231 (+) 1183bp
Gene Type	gene
Gene Description (Protein Product)	AAA domain (dynein-related subfamily)
Organism	Salix suchowensis
Also AS	AT5G03340

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-IMY05_C4845000200 P-loop containing nucleoside triphosphate hydrolase protein

gene-IMY05_C4792000400 FMN-linked oxidoreductase

gene-IMY05_C4879000700 Belongs to the ubiquitin-conjugating enzyme family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000166	nucleotide binding	MF
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005524	ATP binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0008144	obsolete drug binding	MF
GO:0008150	biological_process	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0016887	ATP hydrolysis activity	MF
GO:0017076	purine nucleotide binding	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0030554	adenyl nucleotide binding	MF
GO:0030684	preribosome	CC
GO:0030687	preribosome, large subunit precursor	CC
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032559	adenyl ribonucleotide binding	MF
GO:0032991	protein-containing complex	CC
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0036094	small molecule binding	MF
GO:0042221	response to chemical	BP
GO:0042254	ribosome biogenesis	BP
GO:0042273	ribosomal large subunit biogenesis	BP
GO:0042493	response to xenobiotic stimulus	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0044085	cellular component biogenesis	BP
GO:0044464	obsolete cell part	CC
GO:0050896	response to stimulus	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:1901265	nucleoside phosphate binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map03008	Ribosome biogenesis in eukaryotes	Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.