PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	gene-IMY05_C4801000300 View in Genome Browser
Position	JAEQKX010000986.1:12452-13405 (+) 953bp
Gene Type	gene
Gene Description (Protein Product)	heat shock
Organism	Salix suchowensis
Also AS	AT3G12580

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-IMY05_C4824000100 heat shock protein 70

gene-IMY05_C5274000100 Calreticulin-3-like

gene-IMY05_C5089000500 Tetratricopeptide repeat

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000049	tRNA binding	MF
GO:0000060	obsolete protein import into nucleus, translocation	BP
GO:0000166	nucleotide binding	MF
GO:0000209	protein polyubiquitination	BP
GO:0000322	storage vacuole	CC
GO:0000323	lytic vacuole	CC
GO:0000324	fungal-type vacuole	CC
GO:0000329	fungal-type vacuole membrane	CC
GO:0002181	cytoplasmic translation	BP
GO:0002376	immune system process	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005524	ATP binding	MF
GO:0005575	cellular_component	CC
GO:0005576	extracellular region	CC
GO:0005618	cell wall	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005681	spliceosomal complex	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005773	vacuole	CC
GO:0005774	vacuolar membrane	CC
GO:0005829	cytosol	CC
GO:0005844	polysome	CC
GO:0005886	plasma membrane	CC
GO:0006403	RNA localization	BP
GO:0006404	RNA import into nucleus	BP
GO:0006412	translation	BP
GO:0006457	protein folding	BP
GO:0006464	protein modification process	BP
GO:0006508	proteolysis	BP
GO:0006511	ubiquitin-dependent protein catabolic process	BP
GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	BP
GO:0006518	peptide metabolic process	BP
GO:0006605	protein targeting	BP
GO:0006606	protein import into nucleus	BP
GO:0006612	protein targeting to membrane	BP
GO:0006613	cotranslational protein targeting to membrane	BP
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	BP
GO:0006616	SRP-dependent cotranslational protein targeting to membrane, translocation	BP
GO:0006626	protein targeting to mitochondrion	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006839	mitochondrial transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006913	nucleocytoplasmic transport	BP
GO:0006950	response to stress	BP
GO:0006955	immune response	BP
GO:0006959	humoral immune response	BP
GO:0006970	response to osmotic stress	BP
GO:0006996	organelle organization	BP
GO:0007005	mitochondrion organization	BP
GO:0008104	protein localization	BP
GO:0008144	obsolete drug binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009266	response to temperature stimulus	BP
GO:0009277	fungal-type cell wall	CC
GO:0009408	response to heat	BP
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009636	response to toxic substance	BP
GO:0009986	cell surface	CC
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010467	gene expression	BP
GO:0010498	proteasomal protein catabolic process	BP
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0015931	nucleobase-containing compound transport	BP
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0016192	vesicle-mediated transport	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016567	protein ubiquitination	BP
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0016887	ATP hydrolysis activity	MF
GO:0017038	protein import	BP
GO:0017076	purine nucleotide binding	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0019538	protein metabolic process	BP
GO:0019730	antimicrobial humoral response	BP
GO:0019941	modification-dependent protein catabolic process	BP
GO:0022411	cellular component disassembly	BP
GO:0030163	protein catabolic process	BP
GO:0030260	entry into host	BP
GO:0030312	external encapsulating structure	CC
GO:0030445	yeast-form cell wall	CC
GO:0030446	hyphal cell wall	CC
GO:0030554	adenyl nucleotide binding	MF
GO:0031012	extracellular matrix	CC
GO:0031090	organelle membrane	CC
GO:0031347	regulation of defense response	BP
GO:0031349	positive regulation of defense response	BP
GO:0032446	protein modification by small protein conjugation	BP
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032559	adenyl ribonucleotide binding	MF
GO:0032984	protein-containing complex disassembly	BP
GO:0032988	ribonucleoprotein complex disassembly	BP
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033218	amide binding	MF
GO:0033365	protein localization to organelle	BP
GO:0033554	cellular response to stress	BP
GO:0033993	response to lipid	BP
GO:0034504	protein localization to nucleus	BP
GO:0034605	cellular response to heat	BP
GO:0034613	protein localization	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0035617	stress granule disassembly	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0035719	tRNA import into nucleus	BP
GO:0035821	modulation of process of another organism	BP
GO:0036094	small molecule binding	MF
GO:0036211	protein modification process	BP
GO:0042026	protein refolding	BP
GO:0042221	response to chemical	BP
GO:0042277	peptide binding	MF
GO:0042886	amide transport	BP
GO:0043043	peptide biosynthetic process	BP
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	BP
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043412	macromolecule modification	BP
GO:0043603	amide metabolic process	BP
GO:0043604	amide biosynthetic process	BP
GO:0043624	protein-containing complex disassembly	BP
GO:0043632	modification-dependent macromolecule catabolic process	BP
GO:0043933	protein-containing complex organization	BP
GO:0044003	modulation by symbiont of host process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044257	protein catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044403	biological process involved in symbiotic interaction	BP
GO:0044409	entry into host	BP
GO:0044416	induction by symbiont of host defense response	BP
GO:0044419	biological process involved in interspecies interaction between organisms	BP
GO:0044421	obsolete extracellular region part	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044437	obsolete vacuolar part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0045047	protein targeting to ER	BP
GO:0045184	establishment of protein localization	BP
GO:0046677	response to antibiotic	BP
GO:0046907	intracellular transport	BP
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048584	positive regulation of response to stimulus	BP
GO:0048585	negative regulation of response to stimulus	BP
GO:0050657	nucleic acid transport	BP
GO:0050658	RNA transport	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051031	tRNA transport	BP
GO:0051082	unfolded protein binding	MF
GO:0051093	negative regulation of developmental process	BP
GO:0051169	nuclear transport	BP
GO:0051170	import into nucleus	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051236	establishment of RNA localization	BP
GO:0051261	protein depolymerization	BP
GO:0051603	proteolysis involved in protein catabolic process	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051701	biological process involved in interaction with host	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0051716	cellular response to stimulus	BP
GO:0051806	entry into host	BP
GO:0051817	obsolete modulation of process of other organism involved in symbiotic interaction	BP
GO:0051828	entry into host	BP
GO:0052031	modulation by symbiont of host defense response	BP
GO:0052173	response to defenses of other organism	BP
GO:0052200	response to host defenses	BP
GO:0052251	induction by symbiont of host defense response	BP
GO:0052255	modulation by symbiont of host defense response	BP
GO:0052509	induction by symbiont of host defense response	BP
GO:0052510	induction by symbiont of host defense response	BP
GO:0055085	transmembrane transport	BP
GO:0061077	chaperone-mediated protein folding	BP
GO:0062039	biofilm matrix	CC
GO:0062040	fungal biofilm matrix	CC
GO:0065002	intracellular protein transmembrane transport	BP
GO:0065007	biological regulation	BP
GO:0070585	protein localization to mitochondrion	BP
GO:0070647	protein modification by small protein conjugation or removal	BP
GO:0070727	cellular macromolecule localization	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0070972	protein localization to endoplasmic reticulum	BP
GO:0071014	post-mRNA release spliceosomal complex	CC
GO:0071214	cellular response to abiotic stimulus	BP
GO:0071236	cellular response to antibiotic	BP
GO:0071310	cellular response to organic substance	BP
GO:0071396	cellular response to lipid	BP
GO:0071470	cellular response to osmotic stress	BP
GO:0071702	organic substance transport	BP
GO:0071704	organic substance metabolic process	BP
GO:0071705	nitrogen compound transport	BP
GO:0071806	protein transmembrane transport	BP
GO:0071826	ribonucleoprotein complex subunit organization	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071944	cell periphery	CC
GO:0072318	clathrin coat disassembly	BP
GO:0072319	vesicle uncoating	BP
GO:0072594	establishment of protein localization to organelle	BP
GO:0072599	establishment of protein localization to endoplasmic reticulum	BP
GO:0072655	establishment of protein localization to mitochondrion	BP
GO:0072657	protein localization to membrane	BP
GO:0075136	response to host	BP
GO:0080134	regulation of response to stress	BP
GO:0080135	regulation of cellular response to stress	BP
GO:0090150	establishment of protein localization to membrane	BP
GO:0090342	obsolete regulation of cell aging	BP
GO:0090344	obsolete negative regulation of cell aging	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097305	response to alcohol	BP
GO:0097306	cellular response to alcohol	BP
GO:0097307	response to farnesol	BP
GO:0097308	cellular response to farnesol	BP
GO:0097367	carbohydrate derivative binding	MF
GO:0098588	bounding membrane of organelle	CC
GO:0098805	membrane	CC
GO:0098852	lytic vacuole membrane	CC
GO:0104004	cellular response to environmental stimulus	BP
GO:1900034	regulation of cellular response to heat	BP
GO:1900035	negative regulation of cellular response to heat	BP
GO:1901265	nucleoside phosphate binding	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901566	organonitrogen compound biosynthetic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1901701	cellular response to oxygen-containing compound	BP
GO:1903008	organelle disassembly	BP
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
map04141	Protein processing in endoplasmic reticulum	The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.