PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	gene-IMY05_C4857000200 View in Genome Browser
Position	JAEQKX010001042.1:9354-10245 (-) 891bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the helicase family. RecQ subfamily
Organism	Salix suchowensis
Also AS

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-IMY05_C5088000500 Belongs to the RecA family

gene-IMY05_C4879000700 Belongs to the ubiquitin-conjugating enzyme family

gene-IMY05_C4898000200 Helitron helicase-like domain at N-terminus

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000018	regulation of DNA recombination	BP
GO:0000217	DNA secondary structure binding	MF
GO:0000287	magnesium ion binding	MF
GO:0000400	four-way junction DNA binding	MF
GO:0000403	Y-form DNA binding	MF
GO:0000405	bubble DNA binding	MF
GO:0000723	telomere maintenance	BP
GO:0000724	double-strand break repair via homologous recombination	BP
GO:0000725	recombinational repair	BP
GO:0000731	DNA synthesis involved in DNA repair	BP
GO:0000781	chromosome, telomeric region	CC
GO:0001302	obsolete replicative cell aging	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003678	DNA helicase activity	MF
GO:0003682	chromatin binding	MF
GO:0003684	damaged DNA binding	MF
GO:0003824	catalytic activity	MF
GO:0004003	DNA helicase activity	MF
GO:0004386	helicase activity	MF
GO:0004518	nuclease activity	MF
GO:0004527	exonuclease activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005657	replication fork	CC
GO:0005694	chromosome	CC
GO:0005730	nucleolus	CC
GO:0005737	cytoplasm	CC
GO:0005813	centrosome	CC
GO:0005815	microtubule organizing center	CC
GO:0005856	cytoskeleton	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006260	DNA replication	BP
GO:0006261	DNA-templated DNA replication	BP
GO:0006281	DNA repair	BP
GO:0006284	base-excision repair	BP
GO:0006302	double-strand break repair	BP
GO:0006310	DNA recombination	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0006979	response to oxidative stress	BP
GO:0006996	organelle organization	BP
GO:0007154	cell communication	BP
GO:0007275	multicellular organism development	BP
GO:0007568	aging	BP
GO:0007569	obsolete cell aging	BP
GO:0008026	helicase activity	MF
GO:0008094	ATP-dependent activity, acting on DNA	MF
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008408	3'-5' exonuclease activity	MF
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009267	cellular response to starvation	BP
GO:0009314	response to radiation	BP
GO:0009378	four-way junction helicase activity	MF
GO:0009411	response to UV	BP
GO:0009416	response to light stimulus	BP
GO:0009605	response to external stimulus	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0009991	response to extracellular stimulus	BP
GO:0010212	response to ionizing radiation	BP
GO:0010225	response to UV-C	BP
GO:0010259	multicellular organism aging	BP
GO:0010332	response to gamma radiation	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0010941	regulation of cell death	BP
GO:0015630	microtubule cytoskeleton	CC
GO:0016043	cellular component organization	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016604	nuclear body	CC
GO:0016607	nuclear speck	CC
GO:0016787	hydrolase activity	MF
GO:0016788	hydrolase activity, acting on ester bonds	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0016887	ATP hydrolysis activity	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0030145	manganese ion binding	MF
GO:0031297	replication fork processing	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031667	response to nutrient levels	BP
GO:0031668	cellular response to extracellular stimulus	BP
GO:0031669	cellular response to nutrient levels	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032200	telomere organization	BP
GO:0032356	oxidized DNA binding	MF
GO:0032357	oxidized purine DNA binding	MF
GO:0032392	DNA geometric change	BP
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032508	DNA duplex unwinding	BP
GO:0033036	macromolecule localization	BP
GO:0033365	protein localization to organelle	BP
GO:0033554	cellular response to stress	BP
GO:0034504	protein localization to nucleus	BP
GO:0034613	protein localization	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0040008	regulation of growth	BP
GO:0040009	regulation of growth rate	BP
GO:0042592	homeostatic process	BP
GO:0042594	response to starvation	BP
GO:0042623	ATP hydrolysis activity	MF
GO:0042802	identical protein binding	MF
GO:0042803	protein homodimerization activity	MF
GO:0042981	regulation of apoptotic process	BP
GO:0042995	cell projection	CC
GO:0043005	neuron projection	CC
GO:0043067	regulation of programmed cell death	BP
GO:0043085	positive regulation of catalytic activity	BP
GO:0043138	3'-5' DNA helicase activity	MF
GO:0043140	3'-5' DNA helicase activity	MF
GO:0043167	ion binding	MF
GO:0043169	cation binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044093	positive regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044427	obsolete chromosomal part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0044806	G-quadruplex DNA unwinding	BP
GO:0044877	protein-containing complex binding	MF
GO:0045005	DNA-templated DNA replication maintenance of fidelity	BP
GO:0045911	positive regulation of DNA recombination	BP
GO:0045935	positive regulation of nucleobase-containing compound metabolic process	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046872	metal ion binding	MF
GO:0046914	transition metal ion binding	MF
GO:0046983	protein dimerization activity	MF
GO:0048518	positive regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051052	regulation of DNA metabolic process	BP
GO:0051054	positive regulation of DNA metabolic process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051179	localization	BP
GO:0051276	chromosome organization	BP
GO:0051336	regulation of hydrolase activity	BP
GO:0051345	positive regulation of hydrolase activity	BP
GO:0051641	cellular localization	BP
GO:0051716	cellular response to stimulus	BP
GO:0051880	G-quadruplex DNA binding	MF
GO:0060249	anatomical structure homeostasis	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060542	regulation of strand invasion	BP
GO:0061749	forked DNA-dependent helicase activity	MF
GO:0061820	telomeric D-loop disassembly	BP
GO:0061821	telomeric D-loop binding	MF
GO:0062037	D-loop DNA binding	MF
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0065009	regulation of molecular function	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070035	obsolete purine NTP-dependent helicase activity	MF
GO:0070336	flap-structured DNA binding	MF
GO:0070337	3'-flap-structured DNA binding	MF
GO:0070727	cellular macromolecule localization	BP
GO:0071103	DNA conformation change	BP
GO:0071214	cellular response to abiotic stimulus	BP
GO:0071478	cellular response to radiation	BP
GO:0071479	cellular response to ionizing radiation	BP
GO:0071480	cellular response to gamma radiation	BP
GO:0071496	cellular response to external stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0071897	DNA biosynthetic process	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0090305	nucleic acid phosphodiester bond hydrolysis	BP
GO:0090657	telomeric loop disassembly	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097458	obsolete neuron part	CC
GO:0098530	positive regulation of strand invasion	BP
GO:0098687	chromosomal region	CC
GO:0104004	cellular response to environmental stimulus	BP
GO:0120025	plasma membrane bounded cell projection	CC
GO:0140097	catalytic activity, acting on DNA	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901576	organic substance biosynthetic process	BP
GO:1902570	protein localization to nucleolus	BP
GO:1905773	8-hydroxy-2'-deoxyguanosine DNA binding	MF

KEGG Term	Name	Description
map03018	RNA degradation	The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.