Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
gene-IMY05_C4912000400
View in Genome Browser
Position
JAEQKX010001096.1:11548-13279 (+)
1731bp
Gene Type
gene
Gene Description (Protein Product)
Sec7 domain
Organism
Salix suchowensis
Also AS AT1G01960

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
gene-IMY05_C4939000500 GTP binding

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000045 autophagosome assembly BP
GO:0000137 Golgi cis cisterna CC
GO:0003674 molecular_function MF
GO:0005085 guanyl-nucleotide exchange factor activity MF
GO:0005086 guanyl-nucleotide exchange factor activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005635 nuclear envelope CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005770 late endosome CC
GO:0005794 Golgi apparatus CC
GO:0005795 Golgi stack CC
GO:0005798 Golgi-associated vesicle CC
GO:0005802 trans-Golgi network CC
GO:0005829 cytosol CC
GO:0005938 cell cortex CC
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport BP
GO:0006891 intra-Golgi vesicle-mediated transport BP
GO:0006914 autophagy BP
GO:0006996 organelle organization BP
GO:0007033 vacuole organization BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009987 cellular process BP
GO:0012505 endomembrane system CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0016021 membrane CC
GO:0016043 cellular component organization BP
GO:0016192 vesicle-mediated transport BP
GO:0016236 macroautophagy BP
GO:0019899 enzyme binding MF
GO:0022607 cellular component assembly BP
GO:0031224 obsolete intrinsic component of membrane CC
GO:0031410 cytoplasmic vesicle CC
GO:0031967 organelle envelope CC
GO:0031975 envelope CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0031985 Golgi cisterna CC
GO:0033036 macromolecule localization BP
GO:0034613 protein localization BP
GO:0042886 amide transport BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044428 obsolete nuclear part CC
GO:0044431 obsolete Golgi apparatus part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0046907 intracellular transport BP
GO:0048193 Golgi vesicle transport BP
GO:0051020 GTPase binding MF
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0061919 process utilizing autophagic mechanism BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070727 cellular macromolecule localization BP
GO:0070925 organelle assembly BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0097708 intracellular vesicle CC
GO:0098772 molecular function regulator activity MF
GO:0098791 Golgi apparatus subcompartment CC
GO:0099568 cytoplasmic region CC
GO:1905037 autophagosome organization BP
KEGG Term Name Description
map04144 Endocytosis Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.