Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
SESE_056724.g
View in Genome Browser
Position
Scaffold_250602:4455-6055 (+)
1600bp
Gene Type
gene
Gene Description (Protein Product)
U5 small nuclear ribonucleoprotein
Organism
Sequoia sempervirens
Also AS AT1G06220

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
SESE_072543.g Splicing factor 3B subunit
SESE_074536.g pre-mRNA-splicing factor
SESE_072337.g U6 snRNA-associated Sm-like protein LSm3
Regulatory gene
SESE_007476.g dof zinc finger protein
SESE_022567.g dof zinc finger protein
SESE_047518.g bpc6, bbr bpc6, atbpc6 atbpc6

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.