Basic Information
Gene ID
Position
Scaffold_5681:15429-15905 (-)
476bp
Gene Type
gene
Gene Description (Protein Product)
Transcription factor TFIIH complex subunit Tfb5
Organism
Also AS AT1G62886

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
SESE_071572.g Belongs to the cyclin family
SESE_064322.g General transcription factor IIH subunit
SESE_069842.g Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA
Regulatory gene
SESE_001250.g NAC domain-containing protein
SESE_001370.g Transcription factor
SESE_004082.g Myb family transcription factor

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
map03022 Basal transcription factors -