Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
SESE_074813.g
View in Genome Browser
Position
Scaffold_69645:52693-53158 (-)
465bp
Gene Type
gene
Gene Description (Protein Product)
Peptidyl-prolyl cis-trans isomerase
Organism
Sequoia sempervirens
Also AS AT1G13690

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
SESE_122387.g Belongs to the protein kinase superfamily. Ser Thr protein kinase family
SESE_135261.g pre-mRNA-splicing factor ISY1
SESE_077601.g DNA-directed RNA polymerases II, IV and V subunit

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000375 RNA splicing, via transesterification reactions BP
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile BP
GO:0000398 mRNA splicing, via spliceosome BP
GO:0000413 protein peptidyl-prolyl isomerization BP
GO:0001775 cell activation BP
GO:0002252 immune effector process BP
GO:0002263 cell activation involved in immune response BP
GO:0002274 myeloid leukocyte activation BP
GO:0002275 myeloid cell activation involved in immune response BP
GO:0002283 neutrophil activation involved in immune response BP
GO:0002366 leukocyte activation involved in immune response BP
GO:0002376 immune system process BP
GO:0002443 leukocyte mediated immunity BP
GO:0002444 myeloid leukocyte mediated immunity BP
GO:0002446 neutrophil mediated immunity BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003723 RNA binding MF
GO:0003727 single-stranded RNA binding MF
GO:0003729 mRNA binding MF
GO:0003755 peptidyl-prolyl cis-trans isomerase activity MF
GO:0003824 catalytic activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005576 extracellular region CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005681 spliceosomal complex CC
GO:0005684 U2-type spliceosomal complex CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006281 DNA repair BP
GO:0006283 transcription-coupled nucleotide-excision repair BP
GO:0006289 nucleotide-excision repair BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006396 RNA processing BP
GO:0006397 mRNA processing BP
GO:0006464 protein modification process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006810 transport BP
GO:0006887 exocytosis BP
GO:0006950 response to stress BP
GO:0006955 immune response BP
GO:0006974 cellular response to DNA damage stimulus BP
GO:0008143 poly(A) binding MF
GO:0008144 obsolete drug binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008380 RNA splicing BP
GO:0009889 regulation of biosynthetic process BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0012505 endomembrane system CC
GO:0016018 cyclosporin A binding MF
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016192 vesicle-mediated transport BP
GO:0016604 nuclear body CC
GO:0016607 nuclear speck CC
GO:0016853 isomerase activity MF
GO:0016859 cis-trans isomerase activity MF
GO:0018193 peptidyl-amino acid modification BP
GO:0018208 peptidyl-proline modification BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0030141 secretory granule CC
GO:0031323 regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031410 cytoplasmic vesicle CC
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0031982 vesicle CC
GO:0031983 vesicle lumen CC
GO:0032940 secretion by cell BP
GO:0032991 protein-containing complex CC
GO:0033218 amide binding MF
GO:0033554 cellular response to stress BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034774 secretory granule lumen CC
GO:0036211 protein modification process BP
GO:0036230 granulocyte activation BP
GO:0042119 neutrophil activation BP
GO:0042277 peptide binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043299 leukocyte degranulation BP
GO:0043312 neutrophil degranulation BP
GO:0043412 macromolecule modification BP
GO:0043900 obsolete regulation of multi-organism process BP
GO:0043902 obsolete positive regulation of multi-organism process BP
GO:0043903 regulation of biological process involved in symbiotic interaction BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044451 obsolete nucleoplasm part CC
GO:0044464 obsolete cell part CC
GO:0045055 regulated exocytosis BP
GO:0045069 regulation of viral genome replication BP
GO:0045070 positive regulation of viral genome replication BP
GO:0045321 leukocyte activation BP
GO:0046483 heterocycle metabolic process BP
GO:0046903 secretion BP
GO:0048518 positive regulation of biological process BP
GO:0048524 positive regulation of viral process BP
GO:0050789 regulation of biological process BP
GO:0050792 regulation of viral process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051716 cellular response to stimulus BP
GO:0060205 cytoplasmic vesicle lumen CC
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070717 poly-purine tract binding MF
GO:0071007 U2-type catalytic step 2 spliceosome CC
GO:0071013 catalytic step 2 spliceosome CC
GO:0071704 organic substance metabolic process BP
GO:0080090 regulation of primary metabolic process BP
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0097708 intracellular vesicle CC
GO:0099503 secretory vesicle CC
GO:0101002 ficolin-1-rich granule CC
GO:0140096 catalytic activity, acting on a protein MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1902494 catalytic complex CC
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903900 regulation of viral life cycle BP
GO:1903902 positive regulation of viral life cycle BP
GO:1904813 ficolin-1-rich granule lumen CC
GO:1990904 ribonucleoprotein complex CC
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.