PPGR - Gene Detail

Basic Information

Gene ID	SESE_113407.g View in Genome Browser
Position	Scaffold_96235:29014-29805 (+) 791bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the chaperonin (HSP60) family
Organism	Sequoia sempervirens
Also AS	AT5G56500

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

SESE_118362.g Belongs to the heat shock protein 70 family

SESE_114183.g Cell Division Protein

SESE_139896.g Belongs to the heat shock protein 70 family

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005730	nucleolus	CC
GO:0005737	cytoplasm	CC
GO:0005739	mitochondrion	CC
GO:0005829	cytosol	CC
GO:0005840	ribosome	CC
GO:0006457	protein folding	BP
GO:0006458	'de novo' protein folding	BP
GO:0006996	organelle organization	BP
GO:0007005	mitochondrion organization	BP
GO:0008150	biological_process	BP
GO:0009507	chloroplast	CC
GO:0009526	plastid envelope	CC
GO:0009532	plastid stroma	CC
GO:0009536	plastid	CC
GO:0009570	chloroplast stroma	CC
GO:0009941	chloroplast envelope	CC
GO:0009987	cellular process	BP
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0022626	cytosolic ribosome	CC
GO:0031967	organelle envelope	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031975	envelope	CC
GO:0031981	nuclear lumen	CC
GO:0032991	protein-containing complex	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044183	protein folding chaperone	MF
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044434	obsolete chloroplast part	CC
GO:0044435	obsolete plastid part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044445	obsolete cytosolic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0051082	unfolded protein binding	MF
GO:0061077	chaperone-mediated protein folding	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071840	cellular component organization or biogenesis	BP
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map03018	RNA degradation	The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.