Basic Information
Gene ID
Position
Scaffold_2929:6285-32763 (-)
26478bp
Gene Type
gene
Gene Description (Protein Product)
Rab geranylgeranyltransferase activity
Organism
Also AS AT3G12070

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
SESE_118817.g Protein farnesyltransferase subunit
SESE_118747.g Squalene synthase-like
SESE_117566.g Squalene synthase-like
Regulatory gene
SESE_001495.g B3 domain-containing protein
SESE_004082.g Myb family transcription factor
SESE_007476.g dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
GO Term Description GO Category
GO:0003008 system process BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004659 prenyltransferase activity MF
GO:0004661 protein geranylgeranyltransferase activity MF
GO:0004663 Rab geranylgeranyltransferase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0005968 Rab-protein geranylgeranyltransferase complex CC
GO:0006464 protein modification process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007600 sensory perception BP
GO:0007601 visual perception BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008270 zinc ion binding MF
GO:0008289 lipid binding MF
GO:0008318 protein prenyltransferase activity MF
GO:0009987 cellular process BP
GO:0010941 regulation of cell death BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016740 transferase activity MF
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups MF
GO:0017016 small GTPase binding MF
GO:0017137 small GTPase binding MF
GO:0018342 protein prenylation BP
GO:0018344 protein geranylgeranylation BP
GO:0019538 protein metabolic process BP
GO:0019840 isoprenoid binding MF
GO:0019899 enzyme binding MF
GO:0022607 cellular component assembly BP
GO:0031267 small GTPase binding MF
GO:0032501 multicellular organismal process BP
GO:0032991 protein-containing complex CC
GO:0036211 protein modification process BP
GO:0042981 regulation of apoptotic process BP
GO:0043067 regulation of programmed cell death BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043412 macromolecule modification BP
GO:0043687 post-translational protein modification BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0046982 protein heterodimerization activity MF
GO:0046983 protein dimerization activity MF
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050877 nervous system process BP
GO:0050953 sensory perception of light stimulus BP
GO:0051020 GTPase binding MF
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0097354 prenylation BP
GO:0140096 catalytic activity, acting on a protein MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1902494 catalytic complex CC
GO:1990234 transferase complex CC
KEGG Term Name Description
map01100 Metabolic pathways -
map00604 Glycosphingolipid biosynthesis - ganglio series -
map00603 Glycosphingolipid biosynthesis - globo series -
map00600 Sphingolipid metabolism -
map00531 Glycosaminoglycan degradation -
map00520 Amino sugar and nucleotide sugar metabolism -
map00513 Various types of N-glycan biosynthesis -
map00511 Other glycan degradation -